Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1415 ATGCTGAAACAAGATCCTTTAACTCTTGGTGGTGGTTCTCACTATGGAATTTCTTGTTTCCTTACTAAGAAGCCGGCGAAAAAAGATCGGCACAGCAAGATTTACACTTCTCAAGGCTTGAGAGATCGTAGGGTTAGGCTTTCGATCGAGATCGCTCGAAAGTTCTTCGATCTTCAAGAGATGTTAGGGTTTGACAAAGCTAGCAACACACTTGATTGGCTTTTTACTAAATCTAAGAAAGCAATTAAGGATCTAACGAAAAGCAAGCAAAGAAACAACAATAGTGAAGTTGGTGGTGATGCTAAAAGCTTCACTTCTTCTTCGGATTGTGAAGATTCAGAAGTTGCTACTTATGATTCCTTAAACCTACAAAAGGAGGGTGCAGGAAGTAAAACTGAAGAGAAGAAGTTGAAAAGGGTTCAGATCAAAGAACCTGCTTGTGTTAGAGCAAGTAAGATGAAGGAGTCAAGAGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGTAACAAGATCTCCAACAACAGCATAAGGGGGGTGCAGGAAGTAGAATTGAAGAAAAAGTATGAAAATAACACTAATAATAATCTTCAAGCTTTTCACCAATCAAGATCTTCATCACAAGATCACCAAATAGTGAGTAGTAATGAAGCACAAAGAGATAATTTTAATGTTATTGAAGAATCAATTGTGATTAAGAGAAAGTTGAAGCCTTCTTTGATGATGCATCACCATCATCATCACCATCAACAAAACCATGTGATCCCTAAGGAAGCAACAAGTTTCAACAACAATGGTGATTATAATTTCTTGCCTAATTCATCTCCAAATTGGGATGCTAATATTGGTAGTTCTTCCACTAATAGATCCACCTTTTGTGCAATAGCTAGCATGAATCTTTCTACAGGGCTTCAAATCTTTGGAAAATCATGGGAAGAATGCACCAATCCACGTCTACATTAG 963 0.3769 MLKQDPLTLGGGSHYGISCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQEMLGFDKASNTLDWLFTKSKKAIKDLTKSKQRNNNSEVGGDAKSFTSSSDCEDSEVATYDSLNLQKEGAGSKTEEKKLKRVQIKEPACVRASKMKESREKARARARERTSNKISNNSIRGVQEVELKKKYENNTNNNLQAFHQSRSSSQDHQIVSSNEAQRDNFNVIEESIVIKRKLKPSLMMHHHHHHHQQNHVIPKEATSFNNNGDYNFLPNSSPNWDANIGSSSTNRSTFCAIASMNLSTGLQIFGKSWEECTNPRLH* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1415 320 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 319 IPR005333 GO:0003700
Psa1g1415 320 MobiDBLite consensus disorder prediction 91 105 - -
Psa1g1415 320 ProSiteProfiles R domain profile. 154 171 IPR017888 -
Psa1g1415 320 ProSiteProfiles TCP domain profile. 27 85 IPR017887 -
Psa1g1415 320 MobiDBLite consensus disorder prediction 148 169 - -
Psa1g1415 320 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 3 319 - -
Psa1g1415 320 MobiDBLite consensus disorder prediction 148 168 - -
Psa1g1415 320 MobiDBLite consensus disorder prediction 86 105 - -
Psa1g1415 320 Pfam TCP family transcription factor 26 173 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1415 Psa-Chr1 96398759 96401196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1415 23 168 TCP Transcription Factor Family AT1G67260 46.358 3.49e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa1g1415 TCP 2.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1415 - - cam:101499957 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1415 1 96398759 96401196 Psa4g1016 4 75715015 75717959 ECH
Psa1g1415 1 96398759 96401196 Psa1g1415 1 96398759 96401196 ECH
Psa1g1415 1 96398759 96401196 Psa3g4345 3 408066752 408068730 ECH