Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1402 ATGAAGGATAGGCAGCGGTGGAGAGCGGAAGAGGATGCATTACTATGCGCTTATGTCAAACAGTACAGTCCTAGGGAATGGAACCTTGTGTCTCAGTGCATGAATGCACCTCTTAACCGGGATGCAAAGTCGTGTTTAGAACGGTGGAAGAACTACCTCAAGCCGGCTATTAAGAAAGGATCTCTCACTGAGGAAGAGCAGCGCCTTGTCATTAGCCTTCTAGCAACACATGGAAACAAATGGAAGAAAATCGCTGCACAATTCTTATCTTCATACCGATGCACAAGCGGCAACACCGGGATTGCTTCCTTCATGGTTTCAAATTCCAACAATAAATCACCTGTTAGGCCGAATTCCGCTTCAGTGACATTAAGCCTCTCTCCCTCGACTGTTGTAGCACCTCCTCCGTGGACGCATCCTGTACGAGGACTGGACAATGCGCCTCTTGTTCTTGGGAACGTAGCTCCTCAAGGTGCTGTTCTATTTTTCGACGAAAACATGGTGATGTCTGAGTTGGTAGATTGCTGTAAGGAGTTGGAAGAAGGGCATCATGCATTGGCAGCACATAAGAAAGAGGTGGCATGGGGGTTAAACCGAGTGGAGCTGCCGTTGGAGTCGGAGAAAGCAAGTTTAAGGAGGGAGAAGATGGAGGAAATCGAAGCGAAGATAAAAGCTTTGGGGGAGGAACAAGCATCTGCATTGGATAGAATTGAAGGAGAATATAGAGAACAGTTAGCAGGCTCCGGCTCAACTCAGAAGTCTTTCTCGCCGCCGGCGTCACCCTCTAGCTCCGCCTCAACTCAGAATTCTTTCTCGCCGCCGGCGTCACCGACGTCGCTACAGGAGGATGGTTCCCTACGCGATCCGTTTGTGCCGGAGATAAAGGAGCCACCGCGCAACTACTTGACTGAAAGAGTGAGAAAGAGAAAACCTTTGGAAGAATTCCAAGACAAATCACTCATTCACGGTTTCGAACTCCAAGAGCACGCGGCAAGGTTGCTCGAATCCAACGACCTCTCGTCGTTGCAAGAAGCAATAGACGAGTACGCGAAAACCATGAAAGAAAGATTCAAGATAGTTTTCAAATCGTTCACTCGTTTTTACCCTAACGCATTCTCATTCAAGCTCGCTAAAATCCTCGAACTCCACCCGCCGCTTCAAATACGAACTGAAATTGTTGCTCTTATCCATGAAGTTCTTCCCCGAGGGGTAAACAATCCATTGAATTCATCTATCCTCATTGAACTTAAAATCCCTCTTCTTCATTCACTCATGTTAGAATCCGAAGAAATTTTGTTTCGTTCCCTATGCGAAACGATCGGTCTCCTCGCTGACAGGTTGTACCGCGTAGGGAACCTCGCTGCAAATTTGAATCAATCTTCTCTTGCCTGTTGGGAGGAGCTTCTCGAGTACTCTATCACGTGCATTTGCGGAGAATCCGAATCAGAAAACAAGAAAGGGCTTATATTATTAGCTGAATTACCACTGGATGTTGCTCTAAACAGAGAGATCTCCAGAAGAACCGATATATGTGATTTTCTTGTGCCAGTTTTGTTGAATATGTCGATCAACACGGAAGAAGAGATTCTGATGAGTAGGCTTAAACGTTTGGGTGATTTAGTTTCACTGGATGACGGAAGTATCTTTAAGAGGAAACACGATGTACTGTTTTGGTGTATGATTCGAATAGCGGAGGCAACAGATGCAAGCGAGCAACTGAGATCTGAAGCAGTTTATGTAATCAAGGAGCTTGATACCGCCAAATGTGAATGTGATGGAATGTATGACAAGATTATTTCTGAGGATTGTAAAGATGCTGGGTTGACAGAAAGTTTCCACCGTGGGCAATTCCTGTTGGATTGCCTCTCTATAGATGGGAATGAAAGAGTCTTTGTTCCCACGGTAATTGGGATGATAACAATGAAATATTTACCGAGTATTGATTGGCAGCTACGTCATGCAGCTATGCTGGCCTTTGCTACAATTGCACAGAATAACTTCAAAGAAATGAACATAATTCAGAACTTTGAACAAGTTGCCATATTGGTCCTTAAGTCATTGGATGAGCAGAACAACAGAGTACTTTGGGCTACTATGCATGCCATTAGGCGATTGAGTGAATGTAAGAAACTGTTATTGCGTGCTCAATTTCAGATGAAGTTCTTCGAGAAGCTAGTTCCCATCATTAAAAGTAACTCTTGTGCCCGTGTACTGTCATATGCTCTCATTGCCCTTCGTTCCTTGGTAAAAACTTGTGACTTTGACAAAATATCACATTTTGGGGAACAAATTATAACATCATTACTTTTACTTCTTAAGCATGAAAAACAGAAGTTACAGACCGAAGCTATTGATACCCTGAAGTCGTTTGCAGTTTTAATGGCGGAAAATTTTCGCAAAAATTATTACGATACAACAATAGAAGCACTGAGAGTTATTGCGTTCAGTAGTTTACACAAACCTGTGCTATGTGCCAAATGTTTAGAATGCATCGTACATCTTATAAGGAAAGTTGGGCGAGATAACTTCAAAGAACAAGAAGTTGTTCAGGTTGTGGAATCTCTAATATTACTTGAAAGACAATCGAGTAATGAAGACTATTTATTAAAGTGTATCGTCATAAAGGTTCTAGATCAAATCTGTCAATTCCCAAGAGTGAGTATTGACAAATTTATCAAAGACATCATGCCAATGTTGATTGGATCCATTCAACCCCTAATTGACTTAATGGACAATAAGCTCAGTGATGATAGCCTAAATGATGAGAACAAAAAATTGGTCGAGCTAACAAGAGTTCGGGCTTGTAATACATTGGCATATTGTGCTATTCGGTCATCTATAAACTTTTCCCCCCACATTAGCACGGTTGCTCCACTGTTTATACGTTTGCTTGGTTGTTCTAGTTTTCAAATTCGCAAGGCTTCTATTTTAGGTCTTCCAAAACTATTACTCTCACTTAAAGTAGGTGACAAAAGTAACGACACTAAAAGAGACATGACTTTCGTCATTGTACAATCTTTGATTGTAACATTGATGTTGGGGGATGACAGGGATTTGTCAGTAACAATATTGAGGTTACTTGTTAGATGCTTTCAGATCTCTAGTTCATTTTTCAGTAATGAACTGGTCAAGGTTATTGCTGACGGAATAAACGATGCAGTAAAAGAGATTATTAAATTTGAAATGGAGAAAGCACAAGAAGTAGGAGCATTGGAAGATGAAAG 3224 0.4203 MKDRQRWRAEEDALLCAYVKQYSPREWNLVSQCMNAPLNRDAKSCLERWKNYLKPAIKKGSLTEEEQRLVISLLATHGNKWKKIAAQFLSSYRCTSGNTGIASFMVSNSNNKSPVRPNSASVTLSLSPSTVVAPPPWTHPVRGLDNAPLVLGNVAPQGAVLFFDENMVMSELVDCCKELEEGHHALAAHKKEVAWGLNRVELPLESEKASLRREKMEEIEAKIKALGEEQASALDRIEGEYREQLAGSGSTQKSFSPPASPSSSASTQNSFSPPASPTSLQEDGSLRDPFVPEIKEPPRNYLTERVRKRKPLEEFQDKSLIHGFELQEHAARLLESNDLSSLQEAIDEYAKTMKERFKIVFKSFTRFYPNAFSFKLAKILELHPPLQIRTEIVALIHEVLPRGVNNPLNSSILIELKIPLLHSLMLESEEILFRSLCETIGLLADRLYRVGNLAANLNQSSLACWEELLEYSITCICGESESENKKGLILLAELPLDVALNREISRRTDICDFLVPVLLNMSINTEEEILMSRLKRLGDLVSLDDGSIFKRKHDVLFWCMIRIAEATDASEQLRSEAVYVIKELDTAKCECDGMYDKIISEDCKDAGLTESFHRGQFLLDCLSIDGNERVFVPTVIGMITMKYLPSIDWQLRHAAMLAFATIAQNNFKEMNIIQNFEQVAILVLKSLDEQNNRVLWATMHAIRRLSECKKLLLRAQFQMKFFEKLVPIIKSNSCARVLSYALIALRSLVKTCDFDKISHFGEQIITSLLLLLKHEKQKLQTEAIDTLKSFAVLMAENFRKNYYDTTIEALRVIAFSSLHKPVLCAKCLECIVHLIRKVGRDNFKEQEVVQVVESLILLERQSSNEDYLLKCIVIKVLDQICQFPRVSIDKFIKDIMPMLIGSIQPLIDLMDNKLSDDSLNDENKKLVELTRVRACNTLAYCAIRSSINFSPHISTVAPLFIRLLGCSSFQIRKASILGLPKLLLSLKVGDKSNDTKRDMTFVIVQSLIVTLMLGDDRDLSVTILRLLVRCFQISSSFFSNELVKVIADGINDAVKEIIKFEMEKAQEVGALEDE 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1402 1074 MobiDBLite consensus disorder prediction 243 302 - -
Psa1g1402 1074 Coils Coil 209 236 - -
Psa1g1402 1074 MobiDBLite consensus disorder prediction 245 283 - -
Psa1g1402 1074 Gene3D - 362 1074 IPR011989 -
Psa1g1402 1074 CDD SANT 6 53 IPR001005 -
Psa1g1402 1074 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Psa1g1402 1074 MobiDBLite consensus disorder prediction 288 302 - -
Psa1g1402 1074 SMART sant 3 55 IPR001005 -
Psa1g1402 1074 SMART sant 58 98 IPR001005 -
Psa1g1402 1074 ProSiteProfiles Myb-like domain profile. 54 93 IPR001005 -
Psa1g1402 1074 Pfam Myb-like DNA-binding domain 7 68 - -
Psa1g1402 1074 Gene3D - 4 58 - -
Psa1g1402 1074 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Psa1g1402 1074 PANTHER KARYOPHERIN (IMPORTIN) BETA 3 335 1067 - -
Psa1g1402 1074 PANTHER IMPORTIN BETA 335 1067 IPR040122 GO:0006606
Psa1g1402 1074 SUPERFAMILY ARM repeat 386 1064 IPR016024 -
Psa1g1402 1074 SUPERFAMILY Homeodomain-like 4 88 IPR009057 -
Psa1g1402 1074 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 88 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1402 Psa-Chr1 95395181 95398898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1402 1 87 MYB Transcription Factor Family AT2G37630 80.460 1.14e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g1402 Myb_DNA-bind_6 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1402 K09422 - mus:103991329 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1402 1 95395181 95398898 Psa1g1402 1 95395181 95398898 ECH