Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1390 ATGCCTCGTCGAAGCGCGTCACAGCACACGGCACCACAAGAACCTACCCTGCCTTCATTAGTCCATGTTACGAACCACGACCATCACTTCATCTCCTCATCCACACACGGCCACACCACCACAACCCACACGGCCACCACCAACCGAAACTCATTCCACGAACCACCACCCCCTTTCCGAAATCCAGCGACGCAGCACATCCCACACAACTTATGCTCCCACTCAACCCATAAGCGGAAGCTTAACCTTAAGAAAACTGTTAAGATTGGTCGTCCGGGTTACCGTGTAACTAAACAATTTGATCCTGACACTAAGCAAAGATCACTCCTTTTTCAGATTGAATATCCTGAGATTGAAGACCTTGCAAAGCCTAGGCATCGATTTATGTCCTCCTATGAGCAG 402 0.495 MPRRSASQHTAPQEPTLPSLVHVTNHDHHFISSSTHGHTTTTHTATTNRNSFHEPPPPFRNPATQHIPHNLCSHSTHKRKLNLKKTVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQ 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1390 134 MobiDBLite consensus disorder prediction 31 54 - -
Psa1g1390 134 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 89 134 IPR031781 -
Psa1g1390 134 Gene3D - 70 134 - -
Psa1g1390 134 PANTHER SPLICING FACTOR 3A SUBUNIT 2 75 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1390 Psa-Chr1 94291668 94294522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1390 78 134 C2H2 Transcription Factor Family AT2G32600 78.947 1.50e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1390 K12826 - mnt:21405395 117.472