Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1388 ATGCGCAATCATCTCGGTAGCTACGAGTGCAAACTCTGTTTAACTCTCCACAACAACGAAGGAAACTACCTCGCACATACTCAAGGCAAACGCCATCAAACCAATCTCGCTAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCCACTCAACCTCAACCTCATAAGCGGAAGCTTAACCTTAAGAAAACTGTTAAGATTGGTCGTCCCGGGTATGGTTTAGAAGCAGGGTTGGCTAATGATTTTGGGGGTGTAGCACTTTAA 261 0.4636 MRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKLNLKKTVKIGRPGYGLEAGLANDFGGVAL* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1388 86 SMART ZnF_U1_5 5 39 IPR003604 GO:0003676|GO:0008270
Psa1g1388 86 ProSiteProfiles Zinc finger matrin-type profile. 8 38 IPR000690 GO:0003676|GO:0005634|GO:0008270
Psa1g1388 86 Gene3D Classic Zinc Finger 2 45 - -
Psa1g1388 86 SUPERFAMILY beta-beta-alpha zinc fingers 6 39 IPR036236 -
Psa1g1388 86 Pfam Zinc-finger of C2H2 type 8 32 - -
Psa1g1388 86 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1388 Psa-Chr1 94266397 94266923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1388 1 71 C2H2 Transcription Factor Family AT2G32600 88.732 6.82e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1388 K12826 - dcr:108224534 149.058