Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1386 ATGTATAGAGAATGGGGTTCAAAACCGGGAAGCAGCGGAGCCGCGACGGCGCAAAACGAAGCAATAGACCGCCGCGAGCGTCTCCGACGACTAGCACTCGAAACAATAGATCTAGCAAAAGATCCATATTTCATGCGCAATCATCTCGGTAGCTACAAGTGCAAACTCTATTTAACTCTCCACAACAACGAAGGAAACTACCTCGCACATACTCAAGGCAAACGCCATCAAACCAATCTCGCTAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCCACTCAACCTCAACCTCATAAGCGGAAGCTTAACCTTAAGAAAACTGTTAAGATTGGTTGTCCCGGAAAAGCCCGAGAGCTATTTCATCATCGAAAGAATAATCCCACTGCAAATTCTATCTCAAACGACAACCTTGGCGCTGAAGTCAACAACTCTGACACAGACACAACCAACCATAGCTTCAACGCATCTCCTGAGCATGTAACTGACACAACCGCGACCAGTTTAGAGGTTGAATCCAGCCGCTTAAACGTAGATGTGTCCGGAAACTACCTCGGACATACGCAAGGCAAACGCCATCAAACCAATCTCGCTAAGCGTGCTGCTCGTGAAGCTAAAGATGCTCCCACTCAACCTCAACCTCATAAGCGGAAGCTTAACCTTAAGAAAACTGGTATGAAACCCTTAATTCCTGTTTATTTTGTTTATTTGATTGGTCGTCCTGGGTACCGTGTAACTAAACAATTTGATCCTGACACTAAGCAAAGATCACTCCTTTTTCAGATTGAACATCCTGAGATTGAAGACCTTGCAAAGCCTAGGCATCGATTTATGTCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATATCAGTATCTCTTGTTTGCAGTTGAACCATATGAAACAATTTCTTTCAAGGTCCCTAGCACAGAGATTGACAAGTCCACGCCAAAGTTTTTCTCGCATTGGGACCCAGATTCCAAGATGTTTACGGTCGGTACATTTAATCCTCTTAAATATCCATGA 1029 0.4461 MYREWGSKPGSSGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYKCKLYLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKLNLKKTVKIGCPGKARELFHHRKNNPTANSISNDNLGAEVNNSDTDTTNHSFNASPEHVTDTTATSLEVESSRLNVDVSGNYLGHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKLNLKKTGMKPLIPVYFVYLIGRPGYRVTKQFDPDTKQRSLLFQIEHPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAVEPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTVGTFNPLKYP* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1386 342 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 237 331 IPR031781 -
Psa1g1386 342 PANTHER SPLICING FACTOR 3A SUBUNIT 2 180 333 - -
Psa1g1386 342 PANTHER SPLICING FACTOR 3A SUBUNIT 2 3 114 - -
Psa1g1386 342 Gene3D - 232 338 - -
Psa1g1386 342 SMART CactinC_cactus_3 221 342 - -
Psa1g1386 342 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1386 Psa-Chr1 94233868 94238102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1386 181 340 C2H2 Transcription Factor Family AT2G32600 73.913 1.78e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1386 K12826 - cit:102607630 263.077