Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1376 ATGTATCCTAAATTGTTATTTGAACATACCCATTTGAGAATTCATCAAAAAGATGAATACTTTATGAATTTTCCACCACCATCACTACCATCTCCATCAACACAATCTTCATCAAGTTCTTCAACAATAACACCAGCATCATCTTCTTCATCTTCTAGTACTAAGATTAGTCCAGCTGTTCTTTTCATCATAGTTGTTCTTGCTGTTCTTTTTTTCATATCTGGTTTACTTCATTTACTTGTTAGATTTCTCATAAAGCATCCATCTTCATCATCTTCTGCTCAATCTAATAGACAACAACATAATGAGATTTCAACTTCTGATGCACTTCAAAGACAGCTTCAACAGCTTTTTCATCTTCATGATTCTGGTTTAGATCAAGCTTTCATTGATGCACTTCCTGTTTTTCAATTCAAGGAAATTGTTGGTTTGAATGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTTTCGGAGAAAGATAAGCTAAGGTTGTTACCTGTGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGTTGCTTTCGAATTCAACTTGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGGTTTTCTATTGAAAATCCGATATTCGATTTTGATGATCTTAGAGACGACGACGGTTGTCCTTGTAACGGGGAAAACGGATTCGGTAATAGACAAAAGGAAATTGTTGTTGAAGATGTTGTCGATAAAGGGGTTTTGCCAGTTCGGCTCGGGAAATTCAAGAAGATGAACGCTGAAGTGGGTCGAGAGAACGAAGAAGTCGGTGAAACGAGTAGTAGTAAATTGGATGCAAGAAGATGTTACTCAATGGGATCTTACCAATATGTGGTTGGAAATTCAGAGTTAAGGGTAACTTTGGATGCATTAAACCATGAAAGTAAAGTTCATCATGATGATAGAAGGATGAACAAAGGAATTGAAAACAGTGAGAATCTTTGTGTGGAAAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCGATTTCGAAGATTTGGTTGTGGCCAAGGAAAGGGAAATTTCCTTCAAGTTCTTTAGAAGCTCATAATGGAATGGCATTACCATCTTATCTTAACAAAGATTTGCAGCATCATGGAATGAGGAAAACAGATGGTGTATGA 1170 0.3598 MYPKLLFEHTHLRIHQKDEYFMNFPPPSLPSPSTQSSSSSSTITPASSSSSSSTKISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSSSAQSNRQQHNEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQFKEIVGLNEPFDCAVCLCEFSEKDKLRLLPVCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPIFDFDDLRDDDGCPCNGENGFGNRQKEIVVEDVVDKGVLPVRLGKFKKMNAEVGRENEEVGETSSSKLDARRCYSMGSYQYVVGNSELRVTLDALNHESKVHHDDRRMNKGIENSENLCVESDLEGKKISNVSKGESFSISKIWLWPRKGKFPSSSLEAHNGMALPSYLNKDLQHHGMRKTDGV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1376 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 199 IPR013083 -
Psa1g1376 389 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 17 363 - -
Psa1g1376 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 17 363 - -
Psa1g1376 389 SUPERFAMILY RING/U-box 129 197 - -
Psa1g1376 389 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Psa1g1376 389 CDD RING-H2_PA-TM-RING 149 192 - -
Psa1g1376 389 SMART ring_2 150 191 IPR001841 -
Psa1g1376 389 Pfam Ring finger domain 149 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1376 Psa-Chr1 92852542 92855179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1376 47 361 C3H Transcription Factor Family AT2G18650 40.988 3.29e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1376 - - gmx:100787206 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1376 1 92852542 92855179 Psa1g1376 1 92852542 92855179 ECH
Psa2g2446 2 279785215 279787386 Psa1g1376 1 92852542 92855179 ECH