Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1366 ATGATCATGGAACTCACCGAATCATCCGCGGCTAACCTCAACAACCTCCCGCTTCCGCCGCCGCAACCGCCGCAAAATCATCACAACAACAACAACCTCCAAGATACTCGTTCAATCCTATGCATCGACCTAAACGAGATCCCTTCACCTTCTTCCTCATTCCCCGAAACCCTACCTGACTTCACCATCGACATCGTTCGTACCTACCACGAAAATCCAGCGCCACCTCCCGGTGGTCCTGCAGCTCTTCCCGGTGGTACTACTTCATGCGCCGTGTGTTCTAAGTCCGGCGGAGGTGGAGGTGGTAATTGCTTAGTCTGTGACGGCTGTGAGCGGAGTTTTCACTTGGCTTGCGCCGGGATTCGAGGCGGCGGTGGTCGACAGGTTGCGGCTAGTATAGGAGAGTGGGTTTGCGGTGAGTGTTTGGCTGGTGGTGTGAAGAGTAAACGGTGGCCGTTGGGTGTGAAGTCAAAGCAGCTTCTTGACATCAATGCTTCTCCGCCTAGTGATGTTGATGGAGAAGAGTTGCATGATGCGAGAAAGCACACGATGGGTGATAAATCTTTTGGTACCAATCAATTTGGTGATCCAGTGACATATTCAACCTTCTACAATGGGAGTGCGTTTGGCTTGCAAAGGGCATCTGGAGTCATGACACATGCTGTTAGAGTGGGTTTTGAGGATATATTGAATCACACCCAAGCAATGGCTAGAAGCTTTGAGGAAGTACCATCTCAGACTCAGAGTCCAAATGAGTCAATTTTGCTGGCGCTTAGAGATTTTATATCTGAAAGGCATGGTGTACTGGAGGAAGGTTGGCGAGTGGAACTTAGACAATCAATGATCAGCCCTGACCTGTATGCAGTTTATTGTGCCCCCGATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTAATTATCTGGGGCTGCCGCCTGGCTACAATTCCATGGAATCTGAAATAAAAAATGAAATGTCTCTTTCTTTAGGTGGGCCTCACATATCCAGAAAACGAAAGTCTTCTAGAACTCTGGCAGCCAATGGTTATGCAGAGAAGCAGGGAACGACGATCAATAGTAATTATAAGGATCGTTCTTCTGATGGTTTAATTATGGAATGTGCTAATGCTCAGGGGACTATCCCAAAAGCCACCGAGATTGGAAGAAAAGAGAACAGTCACACCGACCCTGATCAATCCACTGACGGACTTCCTCTGCAGTTTCAGGACTTCTATGTTCTTTCTTTGGGAAAAGTTGATGGGAGACCTTCATATTATGATGTTAACCTTACCTTTCCTGTGGGTTATAAATCTTCCTGGCATGACAAGATTACTGGCTCTCTTTTTACGTGTGAAGTTTTGGACGGTGGTGATTCTGGGCCTATATTTAAGATTAAAAGGTGTTCATGTTCAGAATTTCCTATTCCAGATGGGTCAACCATCCTTTCAATGCAAAGTTGTTGTCAAATTGTAAGCGAAACCAATAAAGGTCAGAGAGAGGTTAATGATAGTATGGATTTTGATGGTGACGAGAGTATCCAGATGATCCTTTTAGAACCTCGTGCCCCAACAGAAAACGACATCTTAAGTTGTGTTGCCAGTTGCTCAAACGAAGCATATGCATCAGAAGGATTAAGGCCAGTTGCTGGTTCAGTTCAAGGTAATACTGGAAATTCATATGCTGGTAATATGGATTTTGGTGATGAAATTGGTGAAGTTTTGGTTGAAGAGCGGTCCCCATTCTCAGCATGGCAACTTATTTCTCAAAAGTTAGTCAGCGCTTGCAAGGATATCTGCAAGAAGAAAGGAACTCTTAAATTATATTGTAAACATGTTGGAAGTGAAATGGGCTTACATAAATGGGGTTTAAGGAATGAAAAAAGGGATACCCACTTCCCTTCGTTGGATAAATTTTGTGGTTATCCTGGGTTTGTCAGCATTCCAGATACACTTTATGCAGACAGTGATCTGACAGATCTCTATGAGCTGTTAGGAAAATGGTTGGAGCAGGATAGATTTGGATTAGATGTTGAATTTGTGCAAGAAGTATTGGAACAGCTTCCTGGTGTGCAGGATTCTTTGCAATATGAACTTTTGAGTAGTAGAACTAACAGCTCTTTATTACCAACAGTGGAAAATGGTTTGCTAGTGGTCGAATGTAAAGGTCAATCAAAATTTCAAGATGAAGCAGCAGCTGTTCAAGGTTTATATAGAAGGCCTAAGAAGGCAAGATTGACTGAAAATTTTGTTAAGGAAGACCGATGTCCACCTCCTGGGAAACCACTGTGCTCTAGGGCTCCTACAGAACTCATTGGTGACATTTTTGAGGTTTGGGAGAATTTAGATCGATTTCATGAAATTCTAGACCTGAAAGAACCATTGTTATTGGAGGAGCTTGAGAAGGAACTTATCAACCCATGGTTTGATGAATTAGAGTTCCCTGAGAAATTGGAGAGGGGAATGGGTAGAAATCAAGTTTTATGTTCACAAGGGGGTAATGATGATTGCCGACTAATAAGTGAAGCTGGTCCATCAGGTTCCACAGAAAGTTCTTTTATTCATATGGAAACAGAAGCTATGAAAGAGGAGGCCCAAGTTAAACTCGCATCTTTCACCTATGTCAGATGCTTTGGTGTAGCATTGACCAAGGCCCATAATTCATTACTAAGAGTTCTAATAAGTGAACTGCAATCAAAGGTGGCTGCTCTGGTGGATCCAAATTCTGAGCCCGGAGAGACTCGGGGTAGACGAGGAAGAAGGAAAGATATAGATAGTGCATTTCCTGCCAAACGAACCAAAGTCAATATGCTTCCTATTAATGAATTAACATGGCCAGAACTAGCTCGTAGATATATCTTGGCTTTCTTATCAATGGACGGTAACCTCGAGTCTGCGGAAATTACTGCCCGTGAAAGTGGTAGAGTATTTCGTTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGGTCCCTTACTGGTGTGGCTGGGATGGAAGCTGATGCACTGTTGCTTGCGGAGGCAACAGCGAAGATTTTTGGTTCCTTGAGCAGAGAAAATGATGTACTCATCATGGAAGAAGATGAGTCTGATGCAAAGGACGCTTCTGAAATGAAATTGGCGAGTGATGGTAAAATTCCTGAATGGGCACAGGTGCTGGAACCTGTCAGAAAGCTACCAACAAATGTGGGAACCCGAATCAGAAAGTGTGTTAATGATGCTTTAGATAAGAATCCGCCAGATTGGGCGAGGAAAATACTGGAACACTCAATTAGTAAGGCCGTGTACAAGGGCAATGCATCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGAAGGAGGTAACTGATGGAGTGCAGCCGAATACCAACAAGGAAAGGAAAAAGAAAATTGTTATATCTATTTCTGACATTATTATGAAGCAATGCCGCATTGTATTACGCCGTGCAGCTGCGGCAGATGATTCAAAAGTTTTTTGCAATTTGTTGGGAAGAAAATTAGTAAATTCTTCTGATAACGATGATGAGGGGCTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGATTTCCGAACTATTGATCTAAGATTGGCTTCTGGAGCTTATGGTGGTTCTCATGAAGCTTTTCTTGAGGATGTTCGTGAGCTGTGGAGCAATGTTCGCGTTGCTTTTGGGGATCAACCGGATTTAGTTGAACTTGCGGAAAAGCTATCCCAGAATTTTGAACTTTTATACGATGAGGAGGTTGTCACTTATGTCCAAAAGTTTGCAGAGTATGCTAAAGTGGGATGCTTGACTGCAGAAATGAAAAAAGAAGTTGATGTTTTCATTGCATCAACAAATGATATTCCGAAGGCCCCTTGGGATGAGGGAGTTTGTAAAGTATGTGGCGTTGATAGGGACGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATAAATATTGCTTGAATCCTCCACTTGCAAGGATCCCTGAAGGAAATTGGTACTGTCCATCTTGCATTGGTGGTAAACATTCAGCACAAGATGTCACGGAACCTGCAAAGATTACTGGAAAACGTAGTTGTAAAAAATTCCAGGGAGAAGTTATCTGTCTTTATTTGGACGCACTAACTCATTTATCGGCTGTAATGGAAGAAAAAGAATATTGGGAGTACAGTGTGGGAGAGAGAACGCTCCTTCTCAAGTTTTTATGCGGTGAGTTGCTCAGCTCTTCCCTGATACGACAGCATCTTGAGCAGTGTGCAGAGTCATCTGTTGAGTTACATCAGAAATTGCGTGCACTTTCTGTGGAGTGGAAAAACCTGAAAATTAAGGAAGATGTTTTATCTACAAAAGCTGCAAAATTTGATTTGTTGTCACAAAGTACCAATGGGGAAGTTGGTCTTAAGGACGGGTTCACATCTTTGTTCTCAAATACAAGTAAATGTCTTTTTAAGCCACATACTGCAACCACCAATCCTAATGGTCTTGGGGTATTTGTTGATAGTCTACCTTCAGAAGAGATTCCTAAAGAGAAGTCTAGGTTCAATAGTGTTGATAAAAGCAATCTTTTTAAGCCACATACTGCAACCACCAATCCTAATGGTCTTGGGGTATTTGTTGATAGTCTACCTTCAGAAGAGATTCCTAAAGAGAAGTCTAGGTTCAATAGTGTTGATAAAAGCATATCCGTGACACATTCAGATTCTGATAGCCAAAATATGAATTCCATAGAAGGACAACTTAGGACTGTTCCTGTGGTTGTGGAGTCTCCATGTACAGATAAATCCCCCAAGTATTTTCCATCCCCAAATCATATGCCTCAAGGAATAAATGGTTACAGTGGAGCAACTCATATTCAGGGTATCCACCAGAAATGTGAGGTAAGGGATGTATCTACTTCTGCGTCATACCAGCAGCAGGGACAATGCGTGCCTGTTGAAGTTTCCCAAAATGCCGTGAATGAGTTGGAACCATACCACCTCGAGCTCAATACCGTCAAGCATAATATTTCGCTACTGCAGGACTCTATAACTAGCATAGGATCACAGCTGTCAAAGGTCCCTGTTCGCCGGGAATTTTTAGGTATTGATTCCATTGGTCGACTATACTGGGCTTTGGGTACACCCACTGAACGTTCACGTATAGTTGTTGATGCAAGTGCTGTTCTTCAGCATAGAAAAGGATTGTCAGTTAGCAAAGATTTTGTCGATAAGTTTTCTGCTCTGCAGCATTGGGCATTATCTGAGAAGGATAACTATAAGATGTTAGGGCTGATCAAGGACTGCTCTCCTTTGAGTTCGCAACCACTTAATGCTATAGGCAATAGTTCACCGTGGATTGCTTATGAAACTGATTCAGAAATCGAAGAGCTATTGGGTTGGTTAACAGATAATGACCCTAAAGAAAAAGAGCTGAGAGATTCCATTATGCTGGCGCCAAAACATAAACTTCAAGAGTTTGTTAATGCAAATACTGAATGTCAGGTTGATGACCAAGAGCCTAGAAATACACCATCTAATTCTCTTGTTACAAAGGCCACTTCCTTGCTGGAAAAGAATTATGGTCCCCACTTTGAGTTGGATAATGCTGAGGTAGTGAAGAAACAAAATATAAAGAACAGAACAACTACTGATGAAAAGCTGTGTAGGTGTGAATGTCTAGAACCCATATGGCCTTCTAGGAAACATTGCTTGTATTGCCACAAAACCTTTTTGACTGATGTTGAATTTGAGGTACACAATGATGGCAAATGTGATGCAGGACTTATGGCCTTGGAGACGAATAAAGATAAAAATGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGATACCTCACTTGAAAAATCCAGAGCTTATGCAGAAACAGCTGGAACCTCGATCAATAAATGTTCCAAGCTAAATTTGAATTTGATTAAATTTTCAAATGAAGGTTCCTCTTGCCCATTTAATTTTGAAGATATATGTTCAAAGTTTGTGACAGATGATTCCAACAAGAAACTTGTCAGAGAAATTGGTCTTATTGGTTCAGATGGTGTCCCATCATTTGTTCCTTCCATATCTCCTTTTCTTAGTGATTTTATGCCATTCTTATCCCTAAAGGGCGATGACATTGTTGGTGGTGCCTCTAAAGCTTCAGAAAACCAGGTTTCTCAGGAAGACACTGATGGTGCTGGCATATGCCATGACAATAAATCAGGAAAATCCACTCCGAGTTTAGCTGCAAATGAGAGTAATGAAACAGGAAAATCCAGTAAATTAGGAGAACAAAGAGTTGGAAAGTTATCTTTTTGTAATCCGGCTTCAGATATGGGAGTCTATGGCTGCTGCGTGGTTCCTTCGTCGTCCTTGAGACCACTAGTTGGTAAAGTTTCTCATATCTTGAGGCAACTAAAGATTAATCTACTTGATATGGATGCTGCACTTCCTGAAGTTGCTCTAAGACCATCAAAGGCACAGTTGGACAGAAGACAGGCTTGGCGTGCATTTGTTAAGTCTGCTGAGACTATATATGAGATGATTCAGGCAACAGTTGCACTGGAGGATATGATTAAGACGGAGTTCTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCTCTTCGAATATACTCTCTTGATTCAGCCATTATGTATGAGAAATTGCCCAATTCAAGTTTAACTGACAGCTCTGATCCTCCTGCCGTAGCAGAACAGAAACTGGCGATCACCGTGGATGCAGATAAAACCAAAGCAAGCCGGAAGTCAAACAGGAAAAGAAAGGAATTGGATGGTTAA 6801 0.4218 MIMELTESSAANLNNLPLPPPQPPQNHHNNNNLQDTRSILCIDLNEIPSPSSSFPETLPDFTIDIVRTYHENPAPPPGGPAALPGGTTSCAVCSKSGGGGGGNCLVCDGCERSFHLACAGIRGGGGRQVAASIGEWVCGECLAGGVKSKRWPLGVKSKQLLDINASPPSDVDGEELHDARKHTMGDKSFGTNQFGDPVTYSTFYNGSAFGLQRASGVMTHAVRVGFEDILNHTQAMARSFEEVPSQTQSPNESILLALRDFISERHGVLEEGWRVELRQSMISPDLYAVYCAPDGKIFDSVYEVANYLGLPPGYNSMESEIKNEMSLSLGGPHISRKRKSSRTLAANGYAEKQGTTINSNYKDRSSDGLIMECANAQGTIPKATEIGRKENSHTDPDQSTDGLPLQFQDFYVLSLGKVDGRPSYYDVNLTFPVGYKSSWHDKITGSLFTCEVLDGGDSGPIFKIKRCSCSEFPIPDGSTILSMQSCCQIVSETNKGQREVNDSMDFDGDESIQMILLEPRAPTENDILSCVASCSNEAYASEGLRPVAGSVQGNTGNSYAGNMDFGDEIGEVLVEERSPFSAWQLISQKLVSACKDICKKKGTLKLYCKHVGSEMGLHKWGLRNEKRDTHFPSLDKFCGYPGFVSIPDTLYADSDLTDLYELLGKWLEQDRFGLDVEFVQEVLEQLPGVQDSLQYELLSSRTNSSLLPTVENGLLVVECKGQSKFQDEAAAVQGLYRRPKKARLTENFVKEDRCPPPGKPLCSRAPTELIGDIFEVWENLDRFHEILDLKEPLLLEELEKELINPWFDELEFPEKLERGMGRNQVLCSQGGNDDCRLISEAGPSGSTESSFIHMETEAMKEEAQVKLASFTYVRCFGVALTKAHNSLLRVLISELQSKVAALVDPNSEPGETRGRRGRRKDIDSAFPAKRTKVNMLPINELTWPELARRYILAFLSMDGNLESAEITARESGRVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATAKIFGSLSRENDVLIMEEDESDAKDASEMKLASDGKIPEWAQVLEPVRKLPTNVGTRIRKCVNDALDKNPPDWARKILEHSISKAVYKGNASGPTKKAVLSVLKEVTDGVQPNTNKERKKKIVISISDIIMKQCRIVLRRAAAADDSKVFCNLLGRKLVNSSDNDDEGLLGSPAMVARPLDFRTIDLRLASGAYGGSHEAFLEDVRELWSNVRVAFGDQPDLVELAEKLSQNFELLYDEEVVTYVQKFAEYAKVGCLTAEMKKEVDVFIASTNDIPKAPWDEGVCKVCGVDRDDDSVLLCDTCDAEYHKYCLNPPLARIPEGNWYCPSCIGGKHSAQDVTEPAKITGKRSCKKFQGEVICLYLDALTHLSAVMEEKEYWEYSVGERTLLLKFLCGELLSSSLIRQHLEQCAESSVELHQKLRALSVEWKNLKIKEDVLSTKAAKFDLLSQSTNGEVGLKDGFTSLFSNTSKCLFKPHTATTNPNGLGVFVDSLPSEEIPKEKSRFNSVDKSNLFKPHTATTNPNGLGVFVDSLPSEEIPKEKSRFNSVDKSISVTHSDSDSQNMNSIEGQLRTVPVVVESPCTDKSPKYFPSPNHMPQGINGYSGATHIQGIHQKCEVRDVSTSASYQQQGQCVPVEVSQNAVNELEPYHLELNTVKHNISLLQDSITSIGSQLSKVPVRREFLGIDSIGRLYWALGTPTERSRIVVDASAVLQHRKGLSVSKDFVDKFSALQHWALSEKDNYKMLGLIKDCSPLSSQPLNAIGNSSPWIAYETDSEIEELLGWLTDNDPKEKELRDSIMLAPKHKLQEFVNANTECQVDDQEPRNTPSNSLVTKATSLLEKNYGPHFELDNAEVVKKQNIKNRTTTDEKLCRCECLEPIWPSRKHCLYCHKTFLTDVEFEVHNDGKCDAGLMALETNKDKNGSSKGRGNLKCDTSLEKSRAYAETAGTSINKCSKLNLNLIKFSNEGSSCPFNFEDICSKFVTDDSNKKLVREIGLIGSDGVPSFVPSISPFLSDFMPFLSLKGDDIVGGASKASENQVSQEDTDGAGICHDNKSGKSTPSLAANESNETGKSSKLGEQRVGKLSFCNPASDMGVYGCCVVPSSSLRPLVGKVSHILRQLKINLLDMDAALPEVALRPSKAQLDRRQAWRAFVKSAETIYEMIQATVALEDMIKTEFLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDSAIMYEKLPNSSLTDSSDPPAVAEQKLAITVDADKTKASRKSNRKRKELDG* 2267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1366 2266 Pfam PHD-finger 90 142 IPR019787 -
Psa1g1366 2266 Pfam PHD-finger 1290 1336 IPR019787 -
Psa1g1366 2266 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1372 1414 IPR028942 -
Psa1g1366 2266 ProSitePatterns Zinc finger PHD-type signature. 1291 1335 IPR019786 -
Psa1g1366 2266 PANTHER OS02G0192300 PROTEIN 36 2266 - -
Psa1g1366 2266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1242 1349 IPR013083 -
Psa1g1366 2266 ProSiteProfiles Zinc finger PHD-type profile. 87 144 IPR019787 -
Psa1g1366 2266 SUPERFAMILY FYVE/PHD zinc finger 88 152 IPR011011 -
Psa1g1366 2266 Gene3D - 403 512 - -
Psa1g1366 2266 SMART PHD_3 89 142 IPR001965 -
Psa1g1366 2266 SMART PHD_3 1290 1336 IPR001965 -
Psa1g1366 2266 ProSitePatterns Zinc finger PHD-type signature. 90 141 IPR019786 -
Psa1g1366 2266 Pfam Bromodomain 1179 1234 IPR001487 GO:0005515
Psa1g1366 2266 ProSiteProfiles Zinc finger PHD-type profile. 1288 1338 IPR019787 -
Psa1g1366 2266 MobiDBLite consensus disorder prediction 2061 2082 - -
Psa1g1366 2266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 150 IPR013083 -
Psa1g1366 2266 CDD Bromodomain 1136 1240 - -
Psa1g1366 2266 ProSiteProfiles Bromodomain profile. 1181 1229 IPR001487 GO:0005515
Psa1g1366 2266 SUPERFAMILY Bromodomain 1126 1245 IPR036427 GO:0005515
Psa1g1366 2266 CDD PHD_SF 89 141 - -
Psa1g1366 2266 CDD PHD1_Lid2p_like 1290 1335 - -
Psa1g1366 2266 Pfam Methyl-CpG binding domain 260 310 IPR001739 GO:0003677
Psa1g1366 2266 MobiDBLite consensus disorder prediction 2040 2083 - -
Psa1g1366 2266 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 36 2266 - -
Psa1g1366 2266 SUPERFAMILY FYVE/PHD zinc finger 1275 1340 IPR011011 -
Psa1g1366 2266 Gene3D - 1117 1241 IPR036427 GO:0005515
Psa1g1366 2266 ProSiteProfiles FYR domain FYRN motif profile. 402 455 IPR003888 GO:0005634
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1366 34 2266 C2H2 Transcription Factor Family AT3G01460 44.596 0.0 1693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa1g1366 Bromodomain 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1366 K22768 - gmx:100820223 3000.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1366 1 91805595 91817923 Psa1g1366 1 91805595 91817923 ECH