Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1365 ATGGAGTCTGGTCGTCTTTACTTTGATACCTCTACTTGTCGTGGTAACAACAGCAACATGAACATGCTCTTCCTTGGGAATGCTGATCTTGGTTTTCGAGGAAGGTCAATGATGAGCATGGAGGAAGGCTCAAAGAGGAGACCTTTCTTCAGTTCGCCGGATGAACTGTATGATGAGGAGTATTACGAGGAACAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCAGAGCAGGTCCATCTGTTAGAGAAGAGCTTTGAAGAAGAGAACAAACTTGAGCCAGAGAGGAAAACTCAATTGGCCAAGAAGCTAGGGTTGCAACCTAGACAGGTGGCTGTATGGTTTCAGAACCGCAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTTAAGTCTTCCTATGATTCCCTTCTTTCAACATATGATTCCATTGTTAAGGAGAATGAGAAACTCAAATCTGAGGTGGTTTCCTTAAATGAGAAGTTTCAAGTTCAAGCTAAAGATATGCTTGAAGAGCCTTTGTCAGAAAATAAAGTTGATCCACTTCCGGTGGATATCGCTCAGATTTTCGGCATGAAGTTGGATGAACACATGAGTTCTGGAAGTGTTGGAAGTGCGGTGGTGGACGAGGGTAGTCCTCATGTTGTTATCGACAGTGTTGATTCGTACTTTCCAGCTGACAACTATGGTGGATGTGTGGCCCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGAAGTGATGATGGGAGGTGTTGTTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACAAAACCATGATGGAGAAGGGTTGAATTGGTGGGGTAATATGTATTATGTTGCATGA 858 0.4359 MESGRLYFDTSTCRGNNSNMNMLFLGNADLGFRGRSMMSMEEGSKRRPFFSSPDELYDEEYYEEQSPEKKRRLTSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSIVKENEKLKSEVVSLNEKFQVQAKDMLEEPLSENKVDPLPVDIAQIFGMKLDEHMSSGSVGSAVVDEGSPHVVIDSVDSYFPADNYGGCVAPIERVQSEEDDGSDDGRCCFDVFVASETEQQNHDGEGLNWWGNMYYVA* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1365 285 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Psa1g1365 285 SUPERFAMILY Homeodomain-like 58 126 IPR009057 -
Psa1g1365 285 SMART HOX_1 67 128 IPR001356 GO:0003677
Psa1g1365 285 Coils Coil 144 164 - -
Psa1g1365 285 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677
Psa1g1365 285 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677
Psa1g1365 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 259 IPR045224 GO:0003700
Psa1g1365 285 Gene3D - 62 131 - -
Psa1g1365 285 Pfam Homeodomain 69 122 IPR001356 GO:0003677
Psa1g1365 285 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355|GO:0043565
Psa1g1365 285 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Psa1g1365 285 CDD homeodomain 69 125 IPR001356 GO:0003677
Psa1g1365 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1365 Psa-Chr1 91801235 91804566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1365 1 279 Homeobox Transcription Factor Family AT3G01470 58.042 2.20e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g1365 Homeodomain 4.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1365 K09338 - gmx:100797836 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1365 1 91801235 91804566 Psa1g1365 1 91801235 91804566 ECH