Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1357 ATGGAAGTTATTGTAACTTTAGTATTAATATTTGTGGGAATTGTGATCTTGATTCTATTTCATGCATGTTTAACTGAGTGGTTTTCTAGAAGAGGATCAATGATTGATAGAAGCGAAAGAAGAATTTCCAAAATTGATTTGGAGAAGCTTCCATGTTATGATTATGTTGCTAAAGAAAATACAAGTTACACTTTGGAATGTGCAATTTGTTTGGAGAACTTCACCATTGGAGATAAGTGTAGATTGTTGCCTAGTTGTAAGCATAGTTTTCATGCTCAATGTGTGGATAAATGGCTTTTGGAGAATTCCATTTGTCCAATTTGTAGATCTAGGGTTTGTTCTCATGGTGCAAAAAAAGTTATTTGTAACAATGGAAGAGGAAGCATAGAAAGTGGTTCATCTAGAAATGTTGGTATAGAATTGAGAGAAAATAATCCAACAACATTAGAAGTAGAATCACAAGAACACTAA 471 0.327 MEVIVTLVLIFVGIVILILFHACLTEWFSRRGSMIDRSERRISKIDLEKLPCYDYVAKENTSYTLECAICLENFTIGDKCRLLPSCKHSFHAQCVDKWLLENSICPICRSRVCSHGAKKVICNNGRGSIESGSSRNVGIELRENNPTTLEVESQEH* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1357 156 SUPERFAMILY RING/U-box 60 114 - -
Psa1g1357 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 144 - -
Psa1g1357 156 ProSiteProfiles Zinc finger RING-type profile. 67 109 IPR001841 -
Psa1g1357 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 117 IPR013083 -
Psa1g1357 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 144 - -
Psa1g1357 156 SMART ring_2 67 108 IPR001841 -
Psa1g1357 156 Pfam Ring finger domain 66 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1357 Psa-Chr1 91307754 91308974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1357 47 113 Carbohydrate Esterase AT3G14320 52.239 3.33e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1357 - K15692 mtr:MTR_6g007680 203.756