Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1334 ATGATTTCCATCTCTCTACTTCACCTTTCACTCACACACACACACTCTTTCTCTCTATCTATCTTCCTCTCTTATATTCTCACTCATATACATGCAAAAATAATGGACAAAAAACCCTGCAACTCATCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGACTTGATTTTGATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGCACGGGAAAGAGTTGCAGGCTTCGATGGTTAAACTATCTTCGTCCCGATGTTAGAAGAGGAAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATTCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACTAGGATACAAAAGCACATTAAGCAAGTTGATAACCCTAATCAACAAAATTTTCAGCAAAAAATGAGTTTAGAGATAAATGATCATCACCATCATCATCCTCATCAACCAAGTAGTAGCCAAGTTTCTAATTTGGTAGAGCCAATGGAAACTTATTCTCCAACTTCATATCAAGGAACTTTGGAGCCATTTCCAACTCAATTTCCAACTATCAATAATGATCATCATCAAAACTCAAATTGTTGTGCCAATGACAACAATAACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAATTACTCAATGGAGATTAA 756 0.3717 MISISLLHLSLTHTHSFSLSIFLSYILTHIHAKIMDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHSKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDNPNQQNFQQKMSLEINDHHHHHPHQPSSSQVSNLVEPMETYSPTSYQGTLEPFPTQFPTINNDHHQNSNCCANDNNNNNYWSMEDIWSMQLLNGD* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1334 251 CDD SANT 52 97 IPR001005 -
Psa1g1334 251 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 35 248 - -
Psa1g1334 251 SMART sant 102 150 IPR001005 -
Psa1g1334 251 SMART sant 49 99 IPR001005 -
Psa1g1334 251 Gene3D - 50 102 - -
Psa1g1334 251 Gene3D - 107 178 - -
Psa1g1334 251 Pfam Myb-like DNA-binding domain 50 97 IPR001005 -
Psa1g1334 251 Pfam Myb-like DNA-binding domain 103 146 IPR001005 -
Psa1g1334 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 35 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Psa1g1334 251 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Psa1g1334 251 ProSiteProfiles Myb-like domain profile. 45 97 IPR001005 -
Psa1g1334 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Psa1g1334 251 SUPERFAMILY Homeodomain-like 47 144 IPR009057 -
Psa1g1334 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 97 IPR017930 -
Psa1g1334 251 CDD SANT 107 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1334 Psa-Chr1 90290979 90296081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1334 30 251 MYB Transcription Factor Family AT3G01530 54.955 9.84e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g1334 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1334 K09422 - gmx:778046 338.961