Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1330 ATGAAGAAGAGTGAGAGTGGTGGATATGTGAGAGCAGATCAAATAGATCTCAAGAGTTTAGATGAACAATTACAGAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAAGAATAAGGAGAAAGAAGATGAAGGGGGTGAAGTTGAAGGAAGGTCTTCTTCTAATACTAGACAAGAATGGGAGATTGATCCTTCTAAACTTATCATCAAAACTGTCATTGCTCGTGGCACTTTTGGTACTGTTCATCGTGGTGTTTATGATGGTCTAGATGTTGCTGTTAAGCTTCTTGATTGGGGGGAAGAGGGACATCGGTCAGACGCCGAAATAGCTTCATTGAGAGCGGCTTTTACACAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGTTTCTTGGTGCAACAATGGGAACATCAGACCTACAGATACAAACGGAAAACGGACATATAGGAATGCCGAGTAATCTCTGTTGTGTCGTCGTTGAGTATTGTCCTGGTGGTGCTCTTAAGTCGTATCTAATTAAAAATCGAAGAAGGAAGCTTGCTTTTAAAGTGGTTGTTCAACTAGCTCTTGACCTTGCAAGAGGGTTGAGTTATCTCCACATAAAAAAGATTGTCCACAGAGACGTTAAAACAGAAAATATGCTTCTAGACAAGTCACGCACGTTGAAAATCGCTGATTTTGGTGTAGCTCGTATCGAAGCTTCGAATCCTCATGACATGACTGGTGAAACTGGAACGCTAGGTTACATGGCTCCCGAGGTTCTAAATGGTAGTGCATACAATAGAAAATGCGACGTGTATAGTTTCGGAATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCTGATCTCAGTTTCTCAGAAGTAACATCAGCTGTTGTAAGACAGAATCTAAGGCCAGAGATTCCGCGATGTTGTCCAAGCTCACTGGCGAACGTGATGAAAAGATGTTGGGATGCTAATCCTGATAAGAGGCCAGAGATGGATGAAGTTGTCATCATGTTGGAAGCTATCGACACTTCAAAAGGCGGAGGTATGATCCCTCTTGATCAGCCTCAAAGTTGTTTATGTTTCCGCAAGTATAGAGGACCTTGA 1113 0.4232 MKKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKKNKEKEDEGGEVEGRSSSNTRQEWEIDPSKLIIKTVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKFLGATMGTSDLQIQTENGHIGMPSNLCCVVVEYCPGGALKSYLIKNRRRKLAFKVVVQLALDLARGLSYLHIKKIVHRDVKTENMLLDKSRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGSAYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVIMLEAIDTSKGGGMIPLDQPQSCLCFRKYRGP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1330 370 MobiDBLite consensus disorder prediction 31 56 - -
Psa1g1330 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 364 - -
Psa1g1330 370 ProSiteProfiles Protein kinase domain profile. 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1330 370 PRINTS Tyrosine kinase catalytic domain signature 164 177 IPR001245 GO:0004672|GO:0006468
Psa1g1330 370 PRINTS Tyrosine kinase catalytic domain signature 202 220 IPR001245 GO:0004672|GO:0006468
Psa1g1330 370 PRINTS Tyrosine kinase catalytic domain signature 268 290 IPR001245 GO:0004672|GO:0006468
Psa1g1330 370 PRINTS Tyrosine kinase catalytic domain signature 312 334 IPR001245 GO:0004672|GO:0006468
Psa1g1330 370 Gene3D Transferase(Phosphotransferase) domain 1 167 357 - -
Psa1g1330 370 PANTHER DUAL-SPECIFICITY KINASE TKL-PL-4 FAMILY-RELATED 1 364 - -
Psa1g1330 370 SMART serkin_6 67 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1330 370 Pfam Protein tyrosine and serine/threonine kinase 69 339 IPR001245 GO:0004672|GO:0006468
Psa1g1330 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Psa1g1330 370 Gene3D Phosphorylase Kinase; domain 1 55 150 - -
Psa1g1330 370 CDD STKc_MAP3K-like 73 341 - -
Psa1g1330 370 SUPERFAMILY Protein kinase-like (PK-like) 53 341 IPR011009 -
Psa1g1330 370 MobiDBLite consensus disorder prediction 31 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1330 Psa-Chr1 89902317 89905976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1330 11 370 MAP Kinase Kinase Kinase AT3G22750 68.306 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Psa1g1330 PK_Tyr_Ser-Thr 7.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1330 - - gmx:100806635 698.353