Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1321 ATGGAGCGTATTTCGGAAAAACGATATCCTCTCAGTGCCGTAGATTACAAGTTATATGAAGAGGTTGGGGAAGGTGTCAGTGCCTCAGTATTCCGAGCTCTCTGCATTCCACTCAATGAGATTGTTGCCATCAAAGTACTTGATCTTGAGAAGTGCAATAATGATTTGGATGGAATTCGCAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATCTTTTAAGAGCGTATTGCTCTTTTACTGCTGGGCACAGTCTTTGGGTCGTGATGCCCTACATGGCTGGTGGCTCTTGCCTTCATATAATGAAATCCGCCTTTCCTGAGGGTTTTGAAGAACCTGTTATTGCAACTGTATTGCGTGAGGTTCTCAAAGCTCTTGTTTATCTCCATGCCCATGGGCACATACATAGAGATGTTAAGGCTGGGAACATTTTGTTTGATTCTAATGGTGCAGTCAAAGTGGCTGACTTTGGAGTGTCCGCGTGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTTATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCCTTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCGATGAAAGTTTTGCTTATGACTTTGCAGAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTCAAAGACCCAAAGAAGCGTCCAAGCTCAGAAAAGCTTTTAAAGCACCATTTCTTTAAACATGCACGTGCCACCGAATATCTTGGTCGCACCATTCTCGATGGCCTTGCTCCATTAGGAGATCGTTTTAAAACGCTGAAGAACAAGGCTCTTTATGAAATGGAGCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTGAAGAGTCAAGCTGCTCTTATTCAAGATGAAGACATGTCAATTGCAGAAAAGCAAGATACAGATAAGAAAAAAGACATATCAAATGACTTAAAGGTTCCAGTGGAGGAGCAATCTGCTTCTAATCATTCAGAGGGTACATCCACACTGGACAAGGAGGATGGATTCAACAATCTTCAGGATTTGGAAAGTTCACTTGCTTCATTCCCTGTTAAACCTCTTCAAGCACTCAAAGGCTGTTTTGATGTCTGTGGTGATGATGATGTCAATAATACTAGTCCAAGAGATTTGGATCACAGTTATGGAAGAGTTGATAATGAAAGTTCTGGGCCAAATAAAATGTCGCCCCAAAATGCTATAACTCAGCCTAAGAAATTTTTCACTAGCTCTTTACAACCTGATAATTTTCCCAAAAAAGTTACTGATGTGGACAGGGATTATCTACAAACAAAATATCCTTCTGAAAGGAATCACAGTGGTCCATTGTTATATCGGCAGAGGAAAGATATCAGCAACTTTCCATCTGTTGATGACACATCAGAAGGAGCGGTTGTCCAGCGTAGGGGACGGTTTAAGGTCACATCAGCAGATCCCAGTTCAATGGGTCTCTCAAACAACTCTTCTGGCCCAGTTGCTGGAAGTCATACTCCTACTCCTACCAGTCCCCCAAAACAGAACTTAATGGTCGCTTCTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAACGGCTTGCAGAGGGAAGAAATTATTAAACTGATAAAGCACACAGAGCAATCTTATGCAGGTAAGAATACAGAATCAATAGAGGCAGGAGCAGTTGATATTCTGCAGGCACCACCTGCTACAACTAGAGAGAAAGAGCTGCATTTGCAGGTGATTCAACTCCAACAGAGCATTGGAAGCCTTGTCGACGAATTGCAGAGACAAAAGATGAAAAATGTTCAGTTAGAGAGACAGTTGAGCAGTATGAACAACAAAATTGAAAAGTGA 1992 0.4172 MERISEKRYPLSAVDYKLYEEVGEGVSASVFRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNLLRAYCSFTAGHSLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATVLREVLKALVYLHAHGHIHRDVKAGNILFDSNGAVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKHARATEYLGRTILDGLAPLGDRFKTLKNKALYEMEQLSQKEYIRGISAWNFNLEDLKSQAALIQDEDMSIAEKQDTDKKKDISNDLKVPVEEQSASNHSEGTSTLDKEDGFNNLQDLESSLASFPVKPLQALKGCFDVCGDDDVNNTSPRDLDHSYGRVDNESSGPNKMSPQNAITQPKKFFTSSLQPDNFPKKVTDVDRDYLQTKYPSERNHSGPLLYRQRKDISNFPSVDDTSEGAVVQRRGRFKVTSADPSSMGLSNNSSGPVAGSHTPTPTSPPKQNLMVASILPSLQCILQQNGLQREEIIKLIKHTEQSYAGKNTESIEAGAVDILQAPPATTREKELHLQVIQLQQSIGSLVDELQRQKMKNVQLERQLSSMNNKIEK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1321 663 SUPERFAMILY Protein kinase-like (PK-like) 15 278 IPR011009 -
Psa1g1321 663 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1321 663 Coils Coil 633 660 - -
Psa1g1321 663 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1321 663 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Psa1g1321 663 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 660 - -
Psa1g1321 663 MobiDBLite consensus disorder prediction 349 384 - -
Psa1g1321 663 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Psa1g1321 663 MobiDBLite consensus disorder prediction 506 554 - -
Psa1g1321 663 MobiDBLite consensus disorder prediction 425 451 - -
Psa1g1321 663 MobiDBLite consensus disorder prediction 530 554 - -
Psa1g1321 663 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1321 663 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 660 - -
Psa1g1321 663 MobiDBLite consensus disorder prediction 349 365 - -
Psa1g1321 663 CDD STKc_OSR1_SPAK 15 277 - -
Psa1g1321 663 MobiDBLite consensus disorder prediction 367 384 - -
Psa1g1321 663 Gene3D Transferase(Phosphotransferase) domain 1 97 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1321 Psa-Chr1 89459452 89472045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1321 1 660 MAP Kinase Kinase Kinase Kinase AT5G14720 62.845 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Psa1g1321 Pkinase 1.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1321 K08835 - gmx:100778837 1040.8