Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1284 ATGGCTGCTACAGCAACAGCGACTTCAGTGGGTCCTAGGTATGCACCAGCTGATCCTACCCTTCCTAAACCATGGAAGGGCCTTGTGGATGGCAAGACAGGGTATCTTTACTTTTGGAATCCTGAGACAAATGTCACCCAGTACGAGAGGCCTTTGAGCTCAGCTGCCCCACCAAAGCCTTCTGCTGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCTTCTCAAGGGCGTGGTCGCAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGAGGGTCAGATGAAAGTGGATCCCGGAGCCATCAGAGCTCCAAAGGTGGCACTAATAGTTCTCATAATAATGTTGCAAATGGAACACATGTTACTGGAAATGTTAGTTCTATCAAAGGTCTTGTAGCATCAGATACAGGACCTGCATTAACTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACGGGAGATAATGTGCCTCCACCTGTTATGTCATTTGCGTCTTCTGGCTTTCCATCAGAGATTCTTAAAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCGTGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGCACTAATAATAACGCCAAAATGGGGCCCACTATATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAAATTCAAGATGAAGCTGTGAAGTTCAGTAAAACATCAAGAATTGCCTGCACTTGTTTGTACGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGCGGAGCGGATATTGTGGTAGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTACACCAGGTCTCTTACCTAGTCCTAGATGAGGCAGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAACGGCGTGCCCGCTCGCAGGCAAACTCTTATGTTTACGGCAACTTGGCCTAAAGAGGTTAGGAAAATTGCAGCTGACCTGCTTGTCAATCCTGTCCAAGTGAACATTGGCAACGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGCGGCGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGACCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCTCAGGCTGATAGGGATCATCTACAGATGTTGCTGCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCTCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTACTTGTAGCTACAGATGTTGCTGCTCGTGGACTGGACGTCAAAGACATTAGAGTGGTTGTCAACTACGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGGAGGGCCGGAGCCACCGGTATAGCTTACACTTTCTTCGGGGACCAGGATGCTAAGCATGCTTCAGATCTTATCAAAATCTTAGAGGGTGCAAATCAGAAAGTCCCTCCAGAACTTCGTGAATTGTCATCCAGGGGTGGCGGTGGGTTTGGCAGATCCAGACGATATGGTTCTGGTGGTCGTGGCGATTCTGGATTCGGTGCGAAGAGTTATGACTCTGGGTCTGGGTATGGTGGAAGGGGTAATGATTCAGGATATGGTGGAAGGGGTAGTGATTCAAGTTATGGAGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGCAGAGGTGGAGGCCGTGGATTTGACTATGACTCACAGAGGAATGAACGTGATCGAAGCCCTGACAGGGGATCTAGCTGGAGTGATCGCTTCAAAACTCGCGAGCGCAGCCGCAGTCCTGTCAAGGCTGCACCATCTCAATATAATGCCCCCGTCAGCTTTCATCAAGCAATGATGGAACGCAATGGAGGAGGCAGTGATCGCAACAAGAGCTTTAACCGGGAGCGAAGCCGTAGTCATAGTCCTTATAGACATGACAAGGGAAAACGTTCACCATCCCCCCCTGGCGGTGGTAGGACCAACAGTAGTTCAGGTGTTGGAAGAAACGGTGGTTCTCATCCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGAGGAAGAAGGAATGATAGGTCATGATGATTCTTCTATATATCAAAGTGCAAATTAG 2331 0.471 MAATATATSVGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPLSSAAPPKPSAVPSSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSDESGSRSHQSSKGGTNSSHNNVANGTHVTGNVSSIKGLVASDTGPALTPEAYRRRHEITVTGDNVPPPVMSFASSGFPSEILKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTILVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHLQMLLLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPPELRELSSRGGGGFGRSRRYGSGGRGDSGFGAKSYDSGSGYGGRGNDSGYGGRGSDSSYGGRGGYGSSAAFGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTRERSRSPVKAAPSQYNAPVSFHQAMMERNGGGSDRNKSFNRERSRSHSPYRHDKGKRSPSPPGGGRTNSSSGVGRNGGSHPYNGELEEGMIPEEEGMIGHDDSSIYQSAN* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1284 776 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Psa1g1284 776 Gene3D - 16 62 - -
Psa1g1284 776 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 457 653 - -
Psa1g1284 776 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 133 450 - -
Psa1g1284 776 MobiDBLite consensus disorder prediction 93 117 - -
Psa1g1284 776 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Psa1g1284 776 Gene3D - 375 451 IPR027417 -
Psa1g1284 776 Gene3D - 452 571 IPR027417 -
Psa1g1284 776 Gene3D - 142 374 IPR027417 -
Psa1g1284 776 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 316 324 IPR000629 -
Psa1g1284 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 370 IPR014001 -
Psa1g1284 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 133 450 - -
Psa1g1284 776 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 457 653 - -
Psa1g1284 776 MobiDBLite consensus disorder prediction 1 26 - -
Psa1g1284 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 569 IPR001650 -
Psa1g1284 776 CDD SF2_C_DEAD 384 539 - -
Psa1g1284 776 MobiDBLite consensus disorder prediction 728 743 - -
Psa1g1284 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 546 IPR027417 -
Psa1g1284 776 MobiDBLite consensus disorder prediction 642 672 - -
Psa1g1284 776 CDD WW 22 51 IPR001202 GO:0005515
Psa1g1284 776 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Psa1g1284 776 SMART ww_5 20 53 IPR001202 GO:0005515
Psa1g1284 776 MobiDBLite consensus disorder prediction 49 117 - -
Psa1g1284 776 Pfam Helicase conserved C-terminal domain 396 530 IPR001650 -
Psa1g1284 776 MobiDBLite consensus disorder prediction 59 80 - -
Psa1g1284 776 MobiDBLite consensus disorder prediction 641 776 - -
Psa1g1284 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 165 193 IPR014014 GO:0003724
Psa1g1284 776 SMART helicmild6 449 530 IPR001650 -
Psa1g1284 776 MobiDBLite consensus disorder prediction 700 725 - -
Psa1g1284 776 Pfam WW domain 21 51 IPR001202 GO:0005515
Psa1g1284 776 Pfam DEAD/DEAH box helicase 189 359 IPR011545 GO:0003676|GO:0005524
Psa1g1284 776 SMART ultradead3 184 387 IPR014001 -
Psa1g1284 776 MobiDBLite consensus disorder prediction 562 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1284 Psa-Chr1 86318729 86323139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1284 163 568 Eukaryotic Initiation Factors Gene Family AT3G19760 31.373 3.79e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1284 K12823 - gmx:100786511 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1284 1 86318729 86323139 Psa1g1284 1 86318729 86323139 ECH