Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1263 ATGGCATCTAGCTACTCATCCAATCCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAATGAAGAATGCATATTTGCACCCTATTTTCCACCAGAAGAGCCTCATAAATTTATAAACGTTCACAAAATATTTGGAGCAAGTAATGTTAGCAAAATTCTGAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAACTCTTTAGCATATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGTTCTTCAAAAACAACTTCTTAGCCTTCAAAAAGAACTTGATGCTACTCATGCTGATTTGATTAGGTTTACTCATCAAGGTTCTTCTTCTTTTGGACATGTTCACTCTCAGGGATTTTTTAATTACCCTTCTAATTAA 408 0.3529 MASSYSSNPPCAACKFLRRKCNEECIFAPYFPPEEPHKFINVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQKQLLSLQKELDATHADLIRFTHQGSSSFGHVHSQGFFNYPSN* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1263 135 Coils Coil 89 109 - -
Psa1g1263 135 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 117 - -
Psa1g1263 135 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Psa1g1263 135 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 117 - -
Psa1g1263 135 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1263 Psa-Chr1 85621392 85622923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1263 7 113 AS2 family AT3G27650 79.439 2.02e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa1g1263 LOB 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1263 - - lja:Lj2g3v0934070.1 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1263 1 85621392 85622923 Psa1g1263 1 85621392 85622923 ECH