Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1258 ATGGCAACTCCAAAATCCAAATCGGTCTTCGACATCGTCAAATCAAGGGAGCTCAATTCCTTTCAAGTTCGAAAACGACCTAACATGGATGGATGGGCTGACGCCTTTTACGAAATCGGAGCTATAGCTACTCAGCATGATTCTGAAGACATTGTCCCCCTTGCTCTCTCTTACGCCAAGACCACTAAATATTCTCACATTCTCGCTTTATCTAACGAGGAAGGGTTTATTAGCTTGTTTGATACTAGTCGTAAATTTCCCTCGCCTACGTGTTATGAAAGAAATGCAGAGCAATCAAGGATTTGTGAATGGAGTTCGCATAATAATGCGGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTCACTGCTTCTGGCGATCAAACGGTTAAAGTATGGGATGTTCAAGAACAGAAGTGTCTTGTAGTGTTAGTGGGGCATTTGGGGAGTGTGAAATCTATTTGTTCTCATCCAACTAATTCAGATATTCTTGTCTCTGGTTCAAGAGATGGATCCTTCCGTCTATGGGACTTAAGATGTAACTCCACTGTGAAGAATAGACGTGGAGAAGGTAGCATATGTTCAATTGCTGATGTCAAAGGAGCACATGATCCATCACAAGCACAACGAGTAAGGAGGTGCAAATCTAAGGGTGCTTCCATGAGTATCACATCTGTTCTTTGGCTCAAGGATCAAGTTTCCATAGCCACTTCTGGTGCAGCGGATAGTGTGCTTAAGTTTTGGGATACCAGAAATTTAAGAAGTACCGTCACTCAGACATGTCCTCAACCGTGTTCAACAGGAAAGCAAAGATTGCATGGTATATCTAGCTTGTCCCAAGATGACAGTGGAGTTTTACTCTCAGCTTCATGCATGGATAGCCGAGTTTATCTATACAATATACTTCAACTTGAAAAAGGGCCGTTAAGATATTTTGAGGGAGGTCGCATAGATTCATTTTTTGTAAAGGCTGCAATTAGCCCCGATGCATCAAACATAGTCTGTGGTTCCAGTAATGGAAAAGCATATGTTTGGCAGGTTAACAAGCCTCAAGTGGAGCCCACTATTTTGAAGAGTCATGATGAGGAAGTTACTGCAGTCGACTGGAGCCGCTCTGACATTGGAAAATTAGCAACTGCTTCTGATGATTTCACAATCCGGATATGGAATAAGCGCAATTATTGTACCACACAAAAGATTCCATTTGCCATCCGAAGAAGAATTATGGCCATGCCTAAAGTCGAGTGCAAAATGCTCTTGAACAATGAAGAAATTTACCCCAAATCCATTGACGATGGCCTATTATCTGATGTAGCTCTGCACAACCCAATAAAGTCAGCCATGCCTACCACCCCACCTAAAATCACTACATCTGAAAGCCATGAAAACCAACTTTCATCAGAATTGGATCTAACCATATCTCCTAAAAACACTCCAGAATCTGCTTTGAAGAGTCCTTCATCTGTATTGAACCCACCATCCTCCCTAAAAAGAACCATCCGAGACTACTTTGCATCATCTTCATGA 1533 0.4181 MATPKSKSVFDIVKSRELNSFQVRKRPNMDGWADAFYEIGAIATQHDSEDIVPLALSYAKTTKYSHILALSNEEGFISLFDTSRKFPSPTCYERNAEQSRICEWSSHNNAVFDVNWIKDDTQILTASGDQTVKVWDVQEQKCLVVLVGHLGSVKSICSHPTNSDILVSGSRDGSFRLWDLRCNSTVKNRRGEGSICSIADVKGAHDPSQAQRVRRCKSKGASMSITSVLWLKDQVSIATSGAADSVLKFWDTRNLRSTVTQTCPQPCSTGKQRLHGISSLSQDDSGVLLSASCMDSRVYLYNILQLEKGPLRYFEGGRIDSFFVKAAISPDASNIVCGSSNGKAYVWQVNKPQVEPTILKSHDEEVTAVDWSRSDIGKLATASDDFTIRIWNKRNYCTTQKIPFAIRRRIMAMPKVECKMLLNNEEIYPKSIDDGLLSDVALHNPIKSAMPTTPPKITTSESHENQLSSELDLTISPKNTPESALKSPSSVLNPPSSLKRTIRDYFASSS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1258 510 SUPERFAMILY WD40 repeat-like 65 403 IPR036322 GO:0005515
Psa1g1258 510 Gene3D - 192 463 IPR015943 GO:0005515
Psa1g1258 510 CDD WD40 107 392 - -
Psa1g1258 510 Gene3D - 9 187 IPR015943 GO:0005515
Psa1g1258 510 ProSitePatterns Trp-Asp (WD) repeats signature. 123 137 IPR019775 -
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 145 IPR001680 GO:0005515
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 181 - -
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 392 IPR001680 GO:0005515
Psa1g1258 510 Pfam WD domain, G-beta repeat 141 179 IPR001680 GO:0005515
Psa1g1258 510 Pfam WD domain, G-beta repeat 358 392 IPR001680 GO:0005515
Psa1g1258 510 Pfam WD domain, G-beta repeat 103 136 IPR001680 GO:0005515
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 138 - -
Psa1g1258 510 MobiDBLite consensus disorder prediction 451 496 - -
Psa1g1258 510 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 2 507 - -
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 392 - -
Psa1g1258 510 PANTHER BNAA06G31940D PROTEIN 2 507 - -
Psa1g1258 510 PRINTS G protein beta WD-40 repeat signature 123 137 IPR020472 -
Psa1g1258 510 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Psa1g1258 510 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Psa1g1258 510 SMART WD40_4 307 348 IPR001680 GO:0005515
Psa1g1258 510 SMART WD40_4 209 251 IPR001680 GO:0005515
Psa1g1258 510 SMART WD40_4 97 136 IPR001680 GO:0005515
Psa1g1258 510 SMART WD40_4 352 392 IPR001680 GO:0005515
Psa1g1258 510 SMART WD40_4 139 179 IPR001680 GO:0005515
Psa1g1258 510 SMART WD40_4 260 302 IPR001680 GO:0005515
Psa1g1258 510 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 188 IPR001680 GO:0005515
Psa1g1258 510 MobiDBLite consensus disorder prediction 449 496 - -
Psa1g1258 510 ProSitePatterns Trp-Asp (WD) repeats signature. 238 252 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1258 Psa-Chr1 84749703 84755460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1258 105 257 U-box Gene Family AT2G33340 27.933 5.79e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1258 K11790 - gmx:100775857 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1258 1 84749703 84755460 Psa1g1258 1 84749703 84755460 ECH