Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1247 ATGGAGAAAGAGATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAATTCAAGCAGCAATGAAACTTAGTAGATTGTGTAGTAAGCAAAAACACAATTTGGCAGAAAGTGGAGTTATGGTCCCTCTGGTTTCCATGCTTCATTCTGAAAACTTTGAAGCTATAGAAGCTTCTCTTTGTGCTCTTCTAAACCTTTCCTTTGGGAGTGAAAGAAACAAGATTCGGATCGTCAGATACGGAGTTTTGCCAATTTTGCTGAACCTCCTCCATTGTGAAAGCCAGACAGTGATACAATTGTCATTAGCAGCCATGTTAACACTTTCTTCATGCAAGAGAAATAAGATAGCTATAGCTTCATCTGGTGCGGTTCAGATTTTGGTTGAATTTATCAATAGTAGTAACACACACACTCAGTCTCAACTAGATGCTATAGCTACTCTCCATAACCTCACAACCTGCCAAGAGATTATTCCATTGATTGAATCTTCTGGTGTTATACTCTCCTTGCTTGAACTGATCCACGGCTCGGTAAAATCGTCTTCATCAGTTGAGAAAGCGATAGGGTTGCTAGAAAAGATTGTTTCTTCATCAGAGAGTGCACTTTGTGAGACTGCTAGTACCGGAGGAGCGATTCGGATACTGGTTGAGACTATTGAGGATGGATCATCACTTGGCAAAGAGCATGCAGTTGGTATACTTCTCCTTATATGTCAAAGCAGCAGAGAAAAATATAGAGTATTGATTTTGACAGACGGGGTGATGCCGGGATTGCTTCAGTTAAGTGCCGCTGGTACGTGCAGAGCCAAATCCATGGCTAGAGAATTGCTATTGCTTCTGAGAGACTGCTCGAGTTGTAGCTCGAGACATAGACAAATTAATCATGAGCTTATAGAACAGATAATGGACGAGATTGATGCAGAAGGAGAGAAATTGGGACATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATAA 990 0.4091 MEKEIVENLWNGDSEAQIQAAMKLSRLCSKQKHNLAESGVMVPLVSMLHSENFEAIEASLCALLNLSFGSERNKIRIVRYGVLPILLNLLHCESQTVIQLSLAAMLTLSSCKRNKIAIASSGAVQILVEFINSSNTHTQSQLDAIATLHNLTTCQEIIPLIESSGVILSLLELIHGSVKSSSSVEKAIGLLEKIVSSSESALCETASTGGAIRILVETIEDGSSLGKEHAVGILLLICQSSREKYRVLILTDGVMPGLLQLSAAGTCRAKSMARELLLLLRDCSSCSSRHRQINHELIEQIMDEIDAEGEKLGHTTLRLVEEMIAKLNT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1247 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Psa1g1247 329 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
Psa1g1247 329 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Psa1g1247 329 SMART arm_5 111 153 IPR000225 GO:0005515
Psa1g1247 329 SMART arm_5 70 110 IPR000225 GO:0005515
Psa1g1247 329 SMART arm_5 154 196 IPR000225 GO:0005515
Psa1g1247 329 SMART arm_5 28 68 IPR000225 GO:0005515
Psa1g1247 329 Gene3D - 3 325 IPR011989 -
Psa1g1247 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Psa1g1247 329 SUPERFAMILY ARM repeat 5 311 IPR016024 -
Psa1g1247 329 Pfam Kinesin-associated protein (KAP) 26 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1247 4 282 U-box Gene Family AT3G54790 31.802 2.37e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1247 - - gmx:100778534 470.314