Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1245 ATGGATTCACGTATCAACGCTGTTGATTCTGTATCAGAGGTTCAGAATTCGGTTTCTAGGGTACCTGCGGTACCGATACGCCACAGTCTTCCTTTAACATCAGGGATTCCCCGTCCTTCGCGGCCTCCCTTATATAGAAATCATCACGGAGCTTCTTCTTCTTCCGCGTCATTTTTGGAACAAAGACATCGTCATAATAATTATGGAACGAAGAACATCCACCATCAAAACAGCTATGTAGTTAATCGAAAGCATTCATATCAGGACAGAAAATTATGCAGCAAGCAACTGTTTGATGATGGTTCCGAGAGTCGCGAGTCATGTTCTGTAGTATTAGAATCCGACAATTGTATCTTAGTTACATCGAAACGAGGTGCCGTTAATCAACCGAAGAATTACCATTGTCAGTCAGAGATTAGTTTTTGTCATAGTCCTCAGAATAGTTTACATTCGACCACTGTCTATTCAGAAGCGAAACAAAGTTTCACCAATACTGAAGTCAGTGAGTGTGTTAGTGTTGATGATGATGATGATGATAAGTCGTGCGAAAGCGGACAAGTTTCGAATTCGTGTGATTTTAATGAAAGTAGGAAAACCAGCATCTATAGAGCGAGTACAGTAAGTGATGTTAGCGACGAAAGCAACACGAGTAGTTTGAGTAGTGCTTTGTATAAACCTCATAAGGCGAATGATATAAGATGGGAAGCGATTCAAGCTGTGCGAGCACGCGTCGGGGTGTTGGAAATGAGGCATTTTAGGTTGATGAAGAAATTGGGATGTGGAGATATAGGAAATGTATATCTAGCTGAACTGAGTGGCACGAGGACTTGTTTTGCTATGAAGCTCATGAATAAAACCGAGCTCGCAAGTCGGAAGAAGCTTGTAAGAGCTCAGACGGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTTTACCTACATTATATACACATTTCGAGACCGAGACAATCTCTTGCTTGGTAATGGAGTTTTGTCCCGGTGGCGACCTTTATTCAATCAGGCAAAGACAGCCTGGGAAGTGTTTCTCGGAGCATGCTGTCAGATTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTACACATGCTTGGAATCGTCTATAGAGACCTTAAACCAGAGAATGTGTTGGTTAGAGAAGATGGTCATATAATGCTTTCGGATTTCGATCTCTCTTTAAGGTGTACCGTCAGTCCAACTCTCGTGAAGTCATCAAACCCGATCGTCGAAACGAAAAGATCAGGATACTGCATTCAGCCCAGATGTGCAATGCAGCCAGATTGCATACAACCTGCATGCTTTTCGCCGCGGTTTCTATCCAGTAAATCCAAAAGAGAGAGAAAATTCAGACCAAAGAATGACATGCATCATCAAGTGACACCTCTCCCTGAGCTAATGGCCGAACCAACAAGTGCACGATCGATGTCCTTTGTAGGCACACACGAGTACTTGGCGCCTGAAATTATCAAAGGCGAAGGACACGGAAGTGCTGTGGATTGGTGGACGTTTGGTATATTCTTATACGAACTCTTGTTTGGTCGAACACCGTTCAAAGGGTCTGCAAACCGAGCGACGCTGCTCAATGTTGTCGGGCAGCCTTTAAGATTTCCGGAATCTCCTACTGTCAGCTTTGCAGCAAGGGATTTGATCAGAGGTTTGCTTGTGAAAGAACCTCAACACCGTCTTGCCTATAGACGCGGAGCAACCGAAATCAAACAACATCCGTTTTTTCATAATGTGAACTGGGCGCTGATCCGTTGCGCTAATCCGCCCGAGGTACCGAGAGACACCGTGATGATGAAACCAACTTCAACCGAAAATGAAGTTGGTATGAACCCTTCTGGTAATTATTTAGATGTTGATTTCTTTTGA 1893 0.4358 MDSRINAVDSVSEVQNSVSRVPAVPIRHSLPLTSGIPRPSRPPLYRNHHGASSSSASFLEQRHRHNNYGTKNIHHQNSYVVNRKHSYQDRKLCSKQLFDDGSESRESCSVVLESDNCILVTSKRGAVNQPKNYHCQSEISFCHSPQNSLHSTTVYSEAKQSFTNTEVSECVSVDDDDDDKSCESGQVSNSCDFNESRKTSIYRASTVSDVSDESNTSSLSSALYKPHKANDIRWEAIQAVRARVGVLEMRHFRLMKKLGCGDIGNVYLAELSGTRTCFAMKLMNKTELASRKKLVRAQTEREILQSLDHPFLPTLYTHFETETISCLVMEFCPGGDLYSIRQRQPGKCFSEHAVRFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNPIVETKRSGYCIQPRCAMQPDCIQPACFSPRFLSSKSKRERKFRPKNDMHHQVTPLPELMAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLLNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRDTVMMKPTSTENEVGMNPSGNYLDVDFF* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1245 630 Pfam Protein kinase domain 481 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1245 630 Pfam Protein kinase domain 253 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1245 630 ProSiteProfiles Protein kinase domain profile. 252 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1245 630 SMART serkin_6 252 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1245 630 SUPERFAMILY Protein kinase-like (PK-like) 230 607 IPR011009 -
Psa1g1245 630 CDD STKc_phototropin_like 250 602 - -
Psa1g1245 630 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 95 630 - -
Psa1g1245 630 Gene3D Transferase(Phosphotransferase) domain 1 336 404 - -
Psa1g1245 630 PANTHER FLIPPASE KINASE 1-RELATED 95 630 - -
Psa1g1245 630 Gene3D Transferase(Phosphotransferase) domain 1 478 602 - -
Psa1g1245 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672|GO:0006468
Psa1g1245 630 Gene3D Phosphorylase Kinase; domain 1 250 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1245 Psa-Chr1 83803765 83806840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1245 135 630 AGC Kinase Gene Family AT5G47750 66.475 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa1g1245 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1245 K08286 - gmx:100810909 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1245 1 83803765 83806840 Psa1g1245 1 83803765 83806840 ECH