LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g1225	ATGGTGAAAGCATTATCTCTAACTCACCACCTCTCCTTCCTCCTACCTCACCCCCATTCCCGATTCACAACTTCTTCTAGATTCTTCCATCAGCTTTCCATCACAAAATCACCATTCCCACTCCGATTCCTCTCCACAACCCCAACCCCCTACCCTCTCCAATACGAACTAATCATAAACCGCCCCGACCTCCCCAAACCCAACCGCCACCGTCGAACCGCCAATCCCCCCAACTCACCCGAACCAAACCAACCCGACTCGCTCCATGACTGGGCCGACGATAAACTATCCACCGAACCCGGTTCGTCTGAACTCGATAAAGCCAAGAGGAAATACTACAATAAACGGAGGAAGAGAATGTATGGATCCGATTCCGATGATGATAATCGGAGAAATGAGGAACAGTTTGTGGAATTGAAACGTGAAGTGGTGGAACTGAGAAGTTTGCATAGGAGAGAAGAGGAATTGTATTTTTACGATGCTTTTGCTTATCCCTGGGAGAAAGATAAACATTACAAAATGGTTTATCAATTGGAGAAAAAGTTTTTTCCTCATCAGTGTTTGGATAAAGCTTTTCTTCAACCAGGTCAATCAAAATCAAATTCAAATTCAGTTTCAGTTTCAATTTCAAATTCAGTTTCAGTTTCAAATTTGAATGAGAATGAGAATGTGAATGAGAATGAGATTGCTAGGGTTAGAAACAAGAAAGTTGGTGTTATTGGTGGGGAGAATGAAGATGAGAAGGTTGGTGATGGTGATAACAAGTTAGTGTTTTTCGAGGAGAATGTGAAAGGGGAAGAAGACAGAAAAAAGGGTGAGAATAAAGATCATAGTGAGAAGAAGGTTGAGGATTTTTTTAAGGGTTTGAAGAAAGATGTTGAAGTTGTCGAGCCGTTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATTCTCCACACGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTTAAAGTGAAAAAGGTTGGCCATGCTGGAACTCTTGATCCAATGGCAACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCCGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGACGACAGACAAAATTTGATTTTTAGAGTGACTTGCTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACGGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCTGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGTCTATCACCAAAACTTATCTTTAA	1608	0.4235	MVKALSLTHHLSFLLPHPHSRFTTSSRFFHQLSITKSPFPLRFLSTTPTPYPLQYELIINRPDLPKPNRHRRTANPPNSPEPNQPDSLHDWADDKLSTEPGSSELDKAKRKYYNKRRKRMYGSDSDDDNRRNEEQFVELKREVVELRSLHRREEELYFYDAFAYPWEKDKHYKMVYQLEKKFFPHQCLDKAFLQPGQSKSNSNSVSVSISNSVSVSNLNENENVNENEIARVRNKKVGVIGGENEDEKVGDGDNKLVFFEENVKGEEDRKKGENKDHSEKKVEDFFKGLKKDVEVVEPFFSSRRTGLPPVWDSPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWEFQELEESITKTYL*	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g1225	535	CDD	PseudoU_synth_EcTruB	318	528	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Psa1g1225	535	Hamap	tRNA pseudouridine synthase B [truB].	315	534	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Psa1g1225	535	SUPERFAMILY	Pseudouridine synthase	317	529	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Psa1g1225	535	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	291	533	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Psa1g1225	535	Pfam	TruB family pseudouridylate synthase (N terminal domain)	337	487	IPR002501	GO:0006396
	Psa1g1225	535	TIGRFAM	TruB: tRNA pseudouridine(55) synthase	317	526	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Psa1g1225	535	Coils	Coil	215	235	-	-
	Psa1g1225	535	MobiDBLite	consensus disorder prediction	61	87	-	-
	Psa1g1225	535	Gene3D	Pseudouridine synthase	311	534	-	-
	Psa1g1225	535	Pfam	tRNA pseudouridylate synthase B C-terminal domain	488	530	IPR032819	-
	Psa1g1225	535	Coils	Coil	129	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g1225	Psa-Chr1	82819443	82825279	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g1225	318	509	NAC Transcription Factor Family	AT3G57150	32.812	1.04e-19	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g1225	K03177		-	gmx:100793939	676.781

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g1225	1	82819443	82825279	Psa1g1225	1	82819443	82825279	ECH