Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1218 ATGACTTTGAGAGAGCCAAGGATTGAGGCTAATCATGCCCTGTTGGAAGAAATTAGGGATGTTAACCAGCGACTTATTGACACAGTAGTAAGCATAAGTGATGAAGAAGTTGATCCATCTGCTGCAGCACCTGCTCAATCACTTGCCATTGGAACTCCTGGAATATCAGCCTCTAGGGCTTTACTGGCAGAGTTCACCAGTCCAGATGGTGCTCATGGAAGCAGAGCTCAAACACCTTCCGTAGGCCTTGATCTTCATAAGATTGGCTCTCGAGAAGACAGTTTCACCAAAGATGAAATAGTTTCAGCATACGCTGGTCCTGTTTCAACATGTTACTGGTGCGGCGACCAACACGAAATGAGGAAGAGAAGTGCAGTGATACATCCCCACCGTCTTCGTCCATGTGCTCAAATATCTGCTTATGCCAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTGCGGATGATCTCGCTTCCTCGGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTCCTTGCAGATATACCTTATGGCTCTAAATCAGATATTTGGTCATTGGGATGTTGTGTATATGAAACAGCGAGACATAGGCCTGCATTCAAAGCATTTGATATACAAGCATTGATAGTGGCTCCACTGCCGAGAAAATATTCCAGTGCATTTCGAAGTCTGGTAAAAAGTCATGCCTTGCGAAAGGAACATTCGAGCATGTCACTGGTTTCAACCTTTTCCAACAGTTCTGCTGGGTTATCTGATACCATTGGAAACCCTGTATTTGAATAA 804 0.4478 MTLREPRIEANHALLEEIRDVNQRLIDTVVSISDEEVDPSAAAPAQSLAIGTPGISASRALLAEFTSPDGAHGSRAQTPSVGLDLHKIGSREDSFTKDEIVSAYAGPVSTCYWCGDQHEMRKRSAVIHPHRLRPCAQISAYAKDRDIRLGDFGLAKMLTADDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYETARHRPAFKAFDIQALIVAPLPRKYSSAFRSLVKSHALRKEHSSMSLVSTFSNSSAGLSDTIGNPVFE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1218 267 ProSiteProfiles Protein kinase domain profile. 1 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1218 267 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 130 239 - -
Psa1g1218 267 Gene3D Transferase(Phosphotransferase) domain 1 131 244 - -
Psa1g1218 267 PANTHER SERINE/THREONINE-KINASE NEK4 130 239 - -
Psa1g1218 267 Pfam Protein kinase domain 143 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1218 267 SUPERFAMILY Protein kinase-like (PK-like) 143 233 IPR011009 -
Psa1g1218 267 SMART serkin_6 48 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1218 Psa-Chr1 82511738 82514237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1218 144 207 MAP Kinase Kinase Kinase AT5G67080 43.284 9.72e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa1g1218 Pkinase 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1218 K08857 - fve:101308009 168.318