Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1174 ATGTGTTCTATTATTAGCTCTGTTTCTTCCTGCTCCCTGCGTTTCTCTCTTTCACTTCCTCCATCTCAAAAATGCAACGCCATCTCTCTTCGCCTTCCAGAACGGCTGACTAACATCATCATTCTAGTGCAAGTGCGTGTGCATCATGTGCATGCCCTTCACTACGTTATTATGGCACCACAATTCTTCATCACTTCTTTAACCATCTTCTTTTTCTCTATTCTCGTCAAATTTTCCTCTTCTATTTCAGATATAGATTCTCTCCTCCTATTGAAAACCTCTTTCCAAAACACCGTTGCGTTATCTTCATGGAACACGTCCATCCCTCCATGTGATGGTGATCATGCTAATTGGTCGGGTGTTCTTTGCTATAGAGGACATATTTGGGGGTTCAAACTCGAAAACATGAACCTTAAAGGCACCATCGACGTCAATGCAATCAAGGATTTACCTTATATCAGAACCATTAGTTTCATGCACAACCAATTCGATTCACCCTGGCCCAACCTCAACAAACTCACTGGTCTCAAGACCATTTTCCTTTCTGATAATAAATTCTCTGGCGACGTTCCGGATGACGCGTTTAAGGGGATGCAATGGTTGAAGAAAATTCATCTCTCTAACAATCAGCTCACTGGTCCTATTCCATCTTCCCTTGCTTCGTTGCCAAGGCTCATGTCCTTGAAGTTGGATGGAAATAAATTCAGTGGTCCTATTCCTCAATTTCAACGCACTATTAAATCATTCAGTGTAGCAAATAATCAATTAGAGGGTCAAATACCTGCCACCCTTAGCAAGATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGCGGAGCCCCTTTAGGACCATGTTCATCCCAAAAGAAATCATTATCACCGCCATCATCATCATCGTCGTCATCATCGTCATCATCAATAGATGCGCACGGTATTTGGTTTGTGGTTCTTGCTAGTCTTGCACTGCTTGTGATTGCGGCAGTAATATTATTTTTCATTATTAGAAGGAAAAAAAAAAGTGAACAGGGAGCATTAGAAGAAGGAGGAGGAGTTGGTCTAATTGGCACCAGCAACAGAACTGTGGAAAGTAGTAGTACTCAAAAGAGAGGACCATCATCGTCGAATAATGATAATTCAGATGATCCAGGAGGTTCAAGAAAGTCACGCGGAAGCAGCAACAACAGTAGCAGAAGAGAAGAAATGAAGTTATCTTTTGTTAGGGAAGAAGCATCAGAACAATTTGATTTACAAGATCTTTTGAGAGCCTCTGCTGAGATATTAGGAAGTAGTTGTCACAGTTCATCTTACAAGGCTGTTCTGTTGAGCGGCTCCACCGTTGTCGTCAAAAGATTCAAACAGATGAACAATGTCGGTAGGGAAGAGTTTAAAGAACACATGAGAAGATTAGGAAGGTTGAATCATCCTAATCTCATTCCTCTCTTAGCTTACTACTACAAAAGAGATGAAAAACTCTTCATTACCCCATCCATTCCCAATGGCAGCTTAGCCGTCCGTCTTCACGGATATAAAGCCATAGGACAAGTAAGCCTTGATTGGCCGAAAAGGTTGAAGATTGTGAAAGGTGTAGCACAAGGTATTGCATATCTGTACCAAGAGTTGCCAAACTTGATTGCGCCTCACGGTAATCTTAAATCTTCCAATGTTCTATTGGGCGAATCGATGGAGCCTATTATAACTGACTATGGATCAGTACCTGTGACAAACCAAGATATTGCTCATGAGATAATGGTTGCGTACAAGTCACCCGAGTATTTGCAGCACGGGCGGATCACTAAGAAGACTGATGTGTGGAGTCTTGGTTTACTCATTTTGGAAATTCTAACTGGAAAATTCCCTGCTAATTTTGTACAACAAAGCGAGTTGAGTTTGGCGAATTGGGTTGATTCAATTGCGCAAGAAGAGTGGACTAGTCAAGTTTTTGATAAAGATATGGAGTTTAGTAGAAATAGTGAGGGAGAGATATATAAGCTTTTGAACATTGCATTGGCTTGTTGTGATATTGATGTTGATAAGAGATTGGATTTACAAGAAGCTGTTGATAGAATTCAAGAGGTACAAATACAAGAGGATAATAATGAGGAGGATCTGTAG 2115 0.408 MCSIISSVSSCSLRFSLSLPPSQKCNAISLRLPERLTNIIILVQVRVHHVHALHYVIMAPQFFITSLTIFFFSILVKFSSSISDIDSLLLLKTSFQNTVALSSWNTSIPPCDGDHANWSGVLCYRGHIWGFKLENMNLKGTIDVNAIKDLPYIRTISFMHNQFDSPWPNLNKLTGLKTIFLSDNKFSGDVPDDAFKGMQWLKKIHLSNNQLTGPIPSSLASLPRLMSLKLDGNKFSGPIPQFQRTIKSFSVANNQLEGQIPATLSKIPASSFSGNEKLCGAPLGPCSSQKKSLSPPSSSSSSSSSSSIDAHGIWFVVLASLALLVIAAVILFFIIRRKKKSEQGALEEGGGVGLIGTSNRTVESSSTQKRGPSSSNNDNSDDPGGSRKSRGSSNNSSRREEMKLSFVREEASEQFDLQDLLRASAEILGSSCHSSSYKAVLLSGSTVVVKRFKQMNNVGREEFKEHMRRLGRLNHPNLIPLLAYYYKRDEKLFITPSIPNGSLAVRLHGYKAIGQVSLDWPKRLKIVKGVAQGIAYLYQELPNLIAPHGNLKSSNVLLGESMEPIITDYGSVPVTNQDIAHEIMVAYKSPEYLQHGRITKKTDVWSLGLLILEILTGKFPANFVQQSELSLANWVDSIAQEEWTSQVFDKDMEFSRNSEGEIYKLLNIALACCDIDVDKRLDLQEAVDRIQEVQIQEDNNEEDL* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1174 704 Pfam Leucine rich repeat N-terminal domain 83 123 IPR013210 -
Psa1g1174 704 SUPERFAMILY Protein kinase-like (PK-like) 426 695 IPR011009 -
Psa1g1174 704 SUPERFAMILY L domain-like 91 284 - -
Psa1g1174 704 Pfam Leucine rich repeat 175 235 IPR001611 GO:0005515
Psa1g1174 704 Gene3D Ribonuclease Inhibitor 200 287 IPR032675 -
Psa1g1174 704 Pfam Protein kinase domain 426 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1174 704 Gene3D Transferase(Phosphotransferase) domain 1 498 703 - -
Psa1g1174 704 PANTHER LRR RECEPTOR-LIKE KINASE 64 700 - -
Psa1g1174 704 MobiDBLite consensus disorder prediction 357 392 - -
Psa1g1174 704 Gene3D Ribonuclease Inhibitor 83 199 IPR032675 -
Psa1g1174 704 Coils Coil 683 703 - -
Psa1g1174 704 ProSiteProfiles Protein kinase domain profile. 422 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1174 704 MobiDBLite consensus disorder prediction 357 403 - -
Psa1g1174 704 Gene3D Phosphorylase Kinase; domain 1 387 495 - -
Psa1g1174 704 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 64 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1174 Psa-Chr1 80986434 80989472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1174 55 702 Receptor kinase-like Gene Family AT5G35390 47.401 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g1174 Pkinase 2.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1174 - - ccaj:109803310 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1174 1 80986434 80989472 Psa1g1174 1 80986434 80989472 ECH