Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1168 ATGCTCGCGGCTCCTCTTTTGCAGACATACATCAGACTAACATATCAAAAGTGTAAGCAAAGAACAATAGTCATGAATCACAAGCGAACCAAAGGGTCTAGGCTAGAGAACGCTATCTCACTTTCCAAGCCGATGAGAAAAGTGGCTGGTCGAACCAGTACCATTGGAGAGCCTATAAATGCCGCAGGCTTGTTGTCCGACATGCTACTTAGAGCAGTGAAAGCACATACTCCATATTCATCTCGACTGGCATATTTGCATGCAAAGAACATTGTTCACGGGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACACATAAAACTGGCAGATTTTGGGATGGCTAAGCATATAAGTGGGCAGTCTCTTCCATTTTCTTTTAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAGAAATTCAAATGGTTGTAATCTTGCTGTTGATATACGGAGTCTGGGCTGCACTGTTCTGGAGATGGCAACAACAAAACCACCTTGGAGCCATTATGAAGGGGTTGCCGCTATGTTTAAGATTGGGAACAGCAGGGAACTTCCTAAAATTCCAGATCATCTATCAGAAGAAAGGGAAAGTTTTGTCAGGCTTTGTTTGCAAAGGGATCCAGTAGATCGTCCTTCAGTTGGCCAACTTCTAGAGCACCCATTTGTTAAAAGCGCTTTTCTGGAAAGACTCTTTCTGACCGCCGATCCTTCAGAATCCCCATCTTCTGTTATGAATGCAATGAGATCACTGGCTATTGGGTCGCCTAAACATACACTATGTTTAGACTTTGAAGAAGTAGCTGGTATCCGCGGTATCCCCCCAGCAAGAAACTTCAGAACCGGTTATGAATCAAGTTATGCTAATAAAGCAAGGATTGTCTCATGTCCCGTTTCTCCATCTGATGGACTACGTGTGCCTCCAAGATCAACGAATCCGAGTGGCAGGATATCTCCCACTCTAACGCCTAATCCTCATACCTCATCGGGCCCTTCTACTCCGCAAGTCTGTAGATGTGGGACAAATCCATACTATCAAACAAAGCAACCTATATTCCCTCATGAAGCTCTGGGTATGACCCATAAATCTCCACACTAG 1107 0.4444 MLAAPLLQTYIRLTYQKCKQRTIVMNHKRTKGSRLENAISLSKPMRKVAGRTSTIGEPINAAGLLSDMLLRAVKAHTPYSSRLAYLHAKNIVHGDIKGANILVDPNGHIKLADFGMAKHISGQSLPFSFKGSPYWMAPEVIRNSNGCNLAVDIRSLGCTVLEMATTKPPWSHYEGVAAMFKIGNSRELPKIPDHLSEERESFVRLCLQRDPVDRPSVGQLLEHPFVKSAFLERLFLTADPSESPSSVMNAMRSLAIGSPKHTLCLDFEEVAGIRGIPPARNFRTGYESSYANKARIVSCPVSPSDGLRVPPRSTNPSGRISPTLTPNPHTSSGPSTPQVCRCGTNPYYQTKQPIFPHEALGMTHKSPH* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1168 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 81 357 - -
Psa1g1168 368 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1168 368 Pfam Protein kinase domain 83 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1168 368 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 81 357 - -
Psa1g1168 368 MobiDBLite consensus disorder prediction 308 337 - -
Psa1g1168 368 SUPERFAMILY Protein kinase-like (PK-like) 83 260 IPR011009 -
Psa1g1168 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 91 103 IPR008271 GO:0004672|GO:0006468
Psa1g1168 368 MobiDBLite consensus disorder prediction 302 337 - -
Psa1g1168 368 Gene3D Transferase(Phosphotransferase) domain 1 60 252 - -
Psa1g1168 368 SMART serkin_6 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1168 Psa-Chr1 80273772 80277550 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1168 81 358 MAP Kinase Kinase Kinase AT1G63700 55.872 3.11e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa1g1168 Pkinase 4.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1168 K20717 - gmx:100814422 387.882