Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1161 ATGAAGACAAAAACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGCTCAAGAAACACCCATCACCTCATTCCTGACTGCAAGTGGTACATTCCACGATGGAGGTCTGCTTTTGAATCAGAAAGGGATGCGTCTCATTTCCGAAGAAAAGGAATCAAGGCCTTCTGATGCTAAAGATCTCGAATTTGACTTCACGTTGGACGACCTTGAGACTGTCAAAGTAATTGGAAAAGGCAGTGGCGGTGTAGTGCAGCTTGTTCGCCATAAGTGGGTTGGAAAATTGTTTGCTTTAAAGGTAATTCAGATGAATATACAAGAGGATATTCGGAAACAGATTGTTCAGGAACTGAAAATAAACCAAGCATCACAGTGTCCACATGTTGTAGTTTGTTACCATTCATTCTATCATAATGGTGTTATATCTCTTGTACTGGAATACATGGATCGTGGTTCTCTAGTAGATGTAATCAGACAAGTTAATACGATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTGTTACAGGGCCTTGTTTACTTGCACAATGAAAGACATGTGATACACAGAGACATCAAACCGTCCAATCTTTTAGTAAATCACAAAGGGGAGGTGAAGATTACTGATTTCGGTGTTAGTGCTATGCTCGCTAGCTCAATGGGCCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTACGGTTACAGCTGTGACATATGGAGTTTAGGGATGGTAGTACTCGAGTGTGCCATAGGACGGTTTCCTTATATACAATCTGAAGATCAGCAAGCCTGGCCTAGTTTCTACGAGCTTTTGCAAGCAATTGTCGAGAGTCCACCGCCTTCTGCTCCTCCTGATCAGTTCTCCCCGGAGTTTTGTTCATTTGTGTCATCCTGCATAAAAAAGGATCCTCGCGAAAGATCAACATCATTGGAGCTTTTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGAATTTTAGTAGGTAGCTTGGAACCTCCTGGAACTAAGAGGATGAAAACAATTGTAGTAATGACCGTGGAATGTCATTTATATGTTACTCATCATGTTTCACAGCCTAGCATTATTGATGAACCAATTCTTTCATTAGAATTACATGATAAAGTTGTTGTGAATGTGGGAGTTGAGTTAGGAGTTAATGAAATTGAAGTGGGGACCAATGTGGTGCAAGAGAGTACAAATGTGGGGACCGATATGGGTGATGAGAGGACAAACTGTGACATTGAGGAGAATGTGGGTGACGGGAGGACGAATTGTAACATTGAGGAGAATATGGATGATGAAGGGGCAAACTGTGACATTAAGGATAATGTGGGGATCACTGAGAGACTCAATTATAACCAGGCAAAAGTTGAGGGAGTTAATGGTAACCAAGCAGAAGTGGAGGTGGAGGTAGAGGGTAGTGAAGACAATGCTTTGGATGTTAATTTTGAAGACTCGGAAAATGATATAGGAATTGATGGAGAGATAGTAGTTGATGATAAGGAACATCTGGTTTATCTTCAAAAGTTGATTGTTGTTTTCCAGAGCACTGGTTTGATAACATCCTCATTCTGA 1623 0.4091 MKTKTPLKQLKLSVPAQETPITSFLTASGTFHDGGLLLNQKGMRLISEEKESRPSDAKDLEFDFTLDDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLVDVIRQVNTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYGYSCDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSCIKKDPRERSTSLELLDHPFIKKFEDKDLDLGILVGSLEPPGTKRMKTIVVMTVECHLYVTHHVSQPSIIDEPILSLELHDKVVVNVGVELGVNEIEVGTNVVQESTNVGTDMGDERTNCDIEENVGDGRTNCNIEENMDDEGANCDIKDNVGITERLNYNQAKVEGVNGNQAEVEVEVEGSEDNALDVNFEDSENDIGIDGEIVVDDKEHLVYLQKLIVVFQSTGLITSSF* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1161 540 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1161 540 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Psa1g1161 540 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Psa1g1161 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Psa1g1161 540 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1161 540 CDD PKc_MAPKK_plant_like 67 333 - -
Psa1g1161 540 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 349 - -
Psa1g1161 540 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1161 540 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 349 - -
Psa1g1161 540 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
Psa1g1161 540 SUPERFAMILY Protein kinase-like (PK-like) 66 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1161 Psa-Chr1 79716770 79724584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1161 1 349 MAP Kinase Kinase Gene Family AT5G56580 85.143 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Psa1g1161 Pkinase 5.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1161 K04368 - gmx:100786284 651.358