Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1134 ATGGATATTATTAAAGGGCATTTTGGTAAAATGAAAATATATAACATGAAATTAGAAGCTTTAAATGGAACATTTAACGAGAGGAACGAAAACAACGGTCGTATAATCACTTTTCCTGCGACGCCGCAAATGTTGAAGAGAGAATCATGTAACCACACTAAACATGATTCTAGCTTTTCTCAATGGAAGATTCTTATTGGTCCTTCTGATTGGGAGGATTTTTCCAAAGGAAAAGAGGGATCTACAAGGTACAGAATTCATAACCTGCCAGAGAATTCGGGTCCGGGAGTGTACGAACTCGGAGTAGCTGTGTCGACTAGTGGTTTGGGGCGTGAAATTTACAAGCTTGCAACTCGCGTTGTTGTGGTTTATCTAGGAAAAGCTGATAATGTGAGAACAAGGCTTCAAAGTTATGGTAGAAATGGAGCTCATTTGGGTAACGGTTTTTCTTCGTTTGAATCTTCCGATCAAGTGAGACATTCATTGTTTCATGAGATCTTTTTTCAAGGCTTCTCAATTGTTTATCGATGGGCTCCTATGCAGAACAAGGGAGATGCATTGCAAACAGAATCTCAACTTCTAAGTACATTTGATTATGCATGGAACACGGTTAATAACGGTGCGCGCCGGCCCGATGATATTCTTCAAATGCTCAACAAAATTTCTTCAGGGACAAGAACATTTTCAGAAGTAGCCAAATCACTTTTACCCTTCACTCAAAAGAAAGTAGGGATACCAATAAAATCAAGAAAATTGCCAATGACAGATAACAAATCAGACGAGCCAGACAATGGCGGCTACAATTTCTTATCTCGCGTGTTCAAATTCAACCGGTCGCGTCCTAGGATAGTTCAGGATATAACTGATTCTGCGGTTGAGAAAAATGGTAAAATTTGTGGAGTGATTTTGAACGATGGTTCTATTTGTACAAATACGCCGGTTGAAAAAAGAGTTAGGTGTCGTGAACATAAAGGAATGAGAGTTAATACGGTCACTACAAAAGCAATGAGAAGATCCAAATCAGAATCAGAAAATGTGTTAGCTGCAAAAGAAATAAGGAGATCCAAGTCAGAATCAGAAAAAATGAGTGACAGTTTTGTGGATGAGAGTATCAGAAAGACTGTTATATGTGGAATTGTTTTGGAAGATGGATCAACTTGTAGAAAAGAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGGAAGAGAATTCGCGCATCTGTTAGTATAAATCAGAAAAAGTGA 1251 0.3821 MDIIKGHFGKMKIYNMKLEALNGTFNERNENNGRIITFPATPQMLKRESCNHTKHDSSFSQWKILIGPSDWEDFSKGKEGSTRYRIHNLPENSGPGVYELGVAVSTSGLGREIYKLATRVVVVYLGKADNVRTRLQSYGRNGAHLGNGFSSFESSDQVRHSLFHEIFFQGFSIVYRWAPMQNKGDALQTESQLLSTFDYAWNTVNNGARRPDDILQMLNKISSGTRTFSEVAKSLLPFTQKKVGIPIKSRKLPMTDNKSDEPDNGGYNFLSRVFKFNRSRPRIVQDITDSAVEKNGKICGVILNDGSICTNTPVEKRVRCREHKGMRVNTVTTKAMRRSKSESENVLAAKEIRRSKSESEKMSDSFVDESIRKTVICGIVLEDGSTCRKEPVKGRKRCHEHKGKRIRASVSINQKK* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1134 416 Pfam GIY-YIG domain-containing protein 59 215 - -
Psa1g1134 416 MobiDBLite consensus disorder prediction 338 362 - -
Psa1g1134 416 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 370 410 - -
Psa1g1134 416 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 40 363 - -
Psa1g1134 416 MobiDBLite consensus disorder prediction 396 416 - -
Psa1g1134 416 SMART uri_9 113 207 IPR000305 -
Psa1g1134 416 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 370 410 IPR038909 GO:0003677|GO:0006355
Psa1g1134 416 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 40 363 IPR038909 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1134 33 408 HRT Transcription Factor Family AT5G56780 42.967 3.44e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Psa1g1134 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1134 - - lang:109350609 450.669