Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1131 ATGATGGTAGGAGAACATCATCGAGCGAATCCAACGGTTCATGTGCCTCCATGGCCCACCCATGACGAACCAACGGCTGAGATTTATTCCTCTTATTTCCCTGACGATTGCAATGCTGGCGTCGGAGATTACTCTCCGTACTATCTCCGTGAAGCACTTACGGCGCTTCAGCGTTATCTTCCGTCTAACGAGTTAGATGGCGATTCCGACTCAGATGTTCACGGCCGTGACTCGGAGTCTCCGGTGGATGCGTACTCATGCGATCATTTTCGCATGTACGAGTTCAAGATAAGGAGATGTGCTCGCGGAAGATCGCATGACTGGACAGAGTGTCCGTACGCTCATCCCGGAGAGAAAGCACGCCGTCGTGATCCAAGGAAATTTCATTATTCCGGTACAGCATGTCCTGATTTTCGCAAAGGAAACTGTAAGAAAGGTGACGCGTGTGAGTACGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCGCGTTACCGTACTCAGCCATGCAAAGACGGAACTAGTTGCCGCCGGCGTGTTTGTTTTTTTGCTCACACACCGGAGCAGATCCGTCTCAATGTTCAACAGAGTACTCCGCGAAGCCTTAACTCACCGGATTCTTATGACGGTTCTCCACTAAGACAAACAGCTTTGCCGTTTATGTCTTCTCCGGTTTCAATTTCTCCACCGGAGTTAGAGTCACCGCCCATATCTCCGATGAGTAAATCTTTAGGTTCAAGTTCAGTTAACGAGATGGTTGCTTCCTTAAGAAATTTACAGCTCGGGAAGTTAAAATCTATGCCAGTTAATAGAAACCTTACATTTGGGTCAGGTTTCGGGTCACCAAGAGGTTCCGTCCTTCGACCCGGGTTTTGTAGTCTGCCTAATACTCCTACACAAAAACCCGGATCGGGTCCGGGTCGGATTGGTGTTGGGTATTTTGATATTTGGGAACAGAGTTGTGAGGAAGAGCCAATAATGGAAAGAGTTGAATCTGGAAGAGACATAAGGGCTAAAATGTTTGAGAAATTAAGCAAAGAAAATTCAATGGAGAATCCGGATTCGGATCCGGGTTTGGGTCAATCAGGTGGCGCTCCGGATGTTGGGTGGGTTTCTGAACTGCTGAAATGA 1131 0.4801 MMVGEHHRANPTVHVPPWPTHDEPTAEIYSSYFPDDCNAGVGDYSPYYLREALTALQRYLPSNELDGDSDSDVHGRDSESPVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVQQSTPRSLNSPDSYDGSPLRQTALPFMSSPVSISPPELESPPISPMSKSLGSSSVNEMVASLRNLQLGKLKSMPVNRNLTFGSGFGSPRGSVLRPGFCSLPNTPTQKPGSGPGRIGVGYFDIWEQSCEEEPIMERVESGRDIRAKMFEKLSKENSMENPDSDPGLGQSGGAPDVGWVSELLK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1131 376 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Psa1g1131 376 PANTHER UNKEMPT FAMILY MEMBER 7 375 IPR045234 -
Psa1g1131 376 MobiDBLite consensus disorder prediction 345 376 - -
Psa1g1131 376 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Psa1g1131 376 Gene3D - 130 192 - -
Psa1g1131 376 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Psa1g1131 376 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Psa1g1131 376 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1131 Psa-Chr1 77339125 77341680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1131 85 191 C2H2 Transcription Factor Family AT5G12850 73.832 2.42e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa1g1131 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1131 - - aprc:113867365 613.609