Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1122 ATGGATCTGATACCAGGGGAAGAGAAAGAGTATTTGAGTTTCGATTCAATTGATAGAACAGACACAACTTATAATGAATCTTATGAAGTTTTAACTCCTGAATTTCTTAGTAAATTAAGAGCATCAGGAATTCCAAATCATAAGATCAAATTGAAGGATTTAGGGTACTCAAAAGTGGAGAGTTTATGGTATTATGATGCAATGGATGATAATGAGCTAGTGTTGTTGAAAGATTATGCAAGAATGAATAGAATGAAAATGATTGCACTGATCAATGAGAATGTACATCTATATGTCATGCATCCAGTTTATGGGGAAAAGCAAATATTGTCTCTAGAAAATAGTGTAGGACCTAATGGTGTAGAAGAAGACAAATTGGAAGATGACACCTTGGATGATTTGAATAATGGTGTAAAAGGAACTTTTGATTATTTGGGGACTTTTGAAGATTTGAATAATCTAGGTGACAAGTTTGATGAAGGAGGGATCACAGGTGTAGAAGATACAACTGCAATTGACCAAGAAGATTCATTTGAGAATGTTAATTTGGATGGGACCACTGAGGTTGATATATTGGATGGCACACCGTATCTGGTACGTGTTCAAAAAGATTCAGTAGCTGAGGAACTTATTTATAACCAAGATGAAAATGAGGGTCTGGAATCTAACCAAGAAGATGAAGATGATGGTAGTGAAAATGACAGTGCTCTGAATGTTAACTTTGAGGATTCTTATGAGGATGCTATAGGAATTGGCGAAGAAATTGTTGTGAATAAAGAGGATGGCAAAGGAAAGGGGAAAAGCAAAGGAAAAGTTAAAGGAAAGGGGAAAGCCAAGAGTGTCGTTGTTGTGTTGATTGATTGCAAAGAAATGGACAACACTAAAATTCAATCAGTCTACCGCAATCCTGTCATATTGCAGAGTGAGGACTTGACAAATTATATATTGGAGACTGCTGTTTATCCTAGAGAGCCAGAGATTCTCAAAGAGCTGAGGAAAGCCTCTGAGACTCACCCTTGGGGTTTCATAGCTACTTTACCCGAGGCTGGTCCATTGATCGGTATACTTTTGAAGCTTTTGAACCCCAAAAAGACAATTGAAGTGGGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCTCTAAACATTCCCCATGATGGAAAGATTACAGCCATAGATATTGACAGGAAAGCTTATGAAATTGGATTACCGGTCATAAGAAAGGCTGGAATGGAACATAAGATTGATTTCATTGAGTCTCCAGCTCTACCAGTTTTGGACAAACTTCTAGAAGATGCATCAAATGAAGGAAGTTTTGAGTATGCTTACATTGATGCTGACAAAGAAAACTATGTAAACTATCATGAAAGACTGATAAAACTAGTCAAAGTTGGTGGCTTACTTATATATGACAACACACTTTGGGGTGGAAGAGTTGCTTGGCCTGAAGAGAAAGTTCCACCACATGCCAAATCAGGAAGAACAGCAGCAATTGAATTCAACAAAACAATCAGAGATGACTCTCGTGTTGATTTTTCTCTCACTTCTATTGGTGATGGACTCACTATTTGTAGACGTATTGTCTAA 1587 0.373 MDLIPGEEKEYLSFDSIDRTDTTYNESYEVLTPEFLSKLRASGIPNHKIKLKDLGYSKVESLWYYDAMDDNELVLLKDYARMNRMKMIALINENVHLYVMHPVYGEKQILSLENSVGPNGVEEDKLEDDTLDDLNNGVKGTFDYLGTFEDLNNLGDKFDEGGITGVEDTTAIDQEDSFENVNLDGTTEVDILDGTPYLVRVQKDSVAEELIYNQDENEGLESNQEDEDDGSENDSALNVNFEDSYEDAIGIGEEIVVNKEDGKGKGKSKGKVKGKGKAKSVVVVLIDCKEMDNTKIQSVYRNPVILQSEDLTNYILETAVYPREPEILKELRKASETHPWGFIATLPEAGPLIGILLKLLNPKKTIEVGVFTGYSLLLTALNIPHDGKITAIDIDRKAYEIGLPVIRKAGMEHKIDFIESPALPVLDKLLEDASNEGSFEYAYIDADKENYVNYHERLIKLVKVGGLLIYDNTLWGGRVAWPEEKVPPHAKSGRTAAIEFNKTIRDDSRVDFSLTSIGDGLTICRRIV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1122 528 Pfam O-methyltransferase 318 527 IPR002935 GO:0008171
Psa1g1122 528 PANTHER METHYLTRANSFERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 294 527 - -
Psa1g1122 528 CDD AdoMet_MTases 366 470 - -
Psa1g1122 528 PANTHER O-METHYLTRANSFERASE-RELATED 294 527 - -
Psa1g1122 528 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 304 527 IPR002935 GO:0008171
Psa1g1122 528 MobiDBLite consensus disorder prediction 212 233 - -
Psa1g1122 528 MobiDBLite consensus disorder prediction 219 233 - -
Psa1g1122 528 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 308 526 IPR029063 -
Psa1g1122 528 Gene3D Vaccinia Virus protein VP39 294 528 IPR029063 -
Psa1g1122 528 Pfam PIF1-like helicase 1 52 IPR010285 GO:0000723|GO:0003678|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1122 Psa-Chr1 76648673 76659259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1122 305 527 Monolignol Biosynthesis Gene Families AT4G26220 60.987 2.40e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1122 K00588 - gmx:100800911 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1122 1 76648673 76659259 Psa1g1122 1 76648673 76659259 ECH