Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1115 ATGGGAAGAGCTCCATGTTGTGATAAATCAAAAGTGAAAAGAGGATCATGGTCTCAAGAAGAAGATGCTATTCTCAAAAACTACCTTCACAAACATGGCACAGCTGGTAATTGGATAGCACTTCCTCAAAAAGCAGGGCTAAAGCGTTGTGGAAAAAGTTGTCGTTTAAGATGGTTGAACTACTTGAGGCCTAATATCAAGCTTGGAGGTTTCACTGAGGAGGAAGATAATATTATCTTCAACCTTTATAGCACCATAGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTAGCAGGAAGAACAGATAATGATGTGAAGAATCATTGGAACACTAAACTCAAGAAAAGGTTTTTGGCACAAAACTCATCCACAAGCAACAATATATACACTTTCAGCAATACTACTACTACTAGTTCTGACCACTTCTCAAGTACTTTGACTTTTCAACCTCAAGTTGAACAACCCTTTGTCTTTGATCAAAACATGAACACATCTTGTTTTGATTCATACAATGTTATGGATTTGGATCAAACACCAATTGGTATTCCTTTACCAATGACAATGAAATCAGAAGCTTTGTATGTTGGAAGTAGCTTTAGTAGTAGCTGTAGTACTACACCAACCACCATGGAAATTTCAAGTTTTTCAAGTGCACCTTTCTTAGAAGATAAGAACAATCATAGTCAATGGTTTGGAAATGACCATGATGATGCAATTCTCCTTGAGTTTGTTCTTGATGATTTTTTAAACCATGGACCCTCATCGGGTTAA 771 0.3735 MGRAPCCDKSKVKRGSWSQEEDAILKNYLHKHGTAGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKLGGFTEEEDNIIFNLYSTIGSRWSLIAAQLAGRTDNDVKNHWNTKLKKRFLAQNSSTSNNIYTFSNTTTTSSDHFSSTLTFQPQVEQPFVFDQNMNTSCFDSYNVMDLDQTPIGIPLPMTMKSEALYVGSSFSSSCSTTPTTMEISSFSSAPFLEDKNNHSQWFGNDHDDAILLEFVLDDFLNHGPSSG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1115 256 Gene3D - 6 68 - -
Psa1g1115 256 CDD SANT 71 113 IPR001005 -
Psa1g1115 256 SMART sant 67 115 IPR001005 -
Psa1g1115 256 SMART sant 13 64 IPR001005 -
Psa1g1115 256 Gene3D - 70 140 - -
Psa1g1115 256 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Psa1g1115 256 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Psa1g1115 256 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa1g1115 256 CDD SANT 16 62 IPR001005 -
Psa1g1115 256 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa1g1115 256 PANTHER OS09G0431300 PROTEIN 1 171 - -
Psa1g1115 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
Psa1g1115 256 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Psa1g1115 256 PANTHER OS09G0431300 PROTEIN 1 171 - -
Psa1g1115 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1115 Psa-Chr1 76418753 76420679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1115 1 118 MYB Transcription Factor Family AT5G65790 78.814 1.05e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g1115 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1115 K09422 - gmx:778160 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1115 1 76418753 76420679 Psa1g1115 1 76418753 76420679 ECH