Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1112 ATGAAAAATCAAAACACATTGATTCTGTCATTTTTCTTCCTCAATCTCCATTTAGCTACAACAAAAGCAGGTTTTAGTGTTGGTGGTAGTGTTGGTGTAGGTGTAGGTGTTGGAAGTGGAGTTGTTTGGGTTGGAGGTGGTAGTAATAGCAACCACAACCAAAACCAAAACCAAAACCCAAAATCCTATGAATCTCCAATATCAAAAATGGATTCAGCTTTTTCAGCTCTTCAAGCTTGGAAATCTTCAATAACTGATGATCCTTTAAAGATTCTAGATTCTTGGGTAGGTTCAAATGTTTGTTCATACAAAGGAATCTTCTGTTCAAATCCCGAGAATGGAAATGCAATGTCTTCTAGTTCAGCTGAATCTGCTTCACTAGTTGTTGCAGGAATAGATCTAAACCATGCAAATCTTCAAGGAACTCTTGTAAAAGAACTATCTTTACTCACTGATATTTCAATTCTTCATCTCAACAGTAACAGATTCAGTGGAACAGTACCTGAAACATTCAAAGATCTTGTTTTTCTTCAAGAGTTAGACTTGAGCAATAATCAGCTTTCAGGTTCTTTTCCTTTGGTTACATTGTATATGCAAAGTTTGATTTACTTGGACATTAGATTCAACTTTTTCTCAGGCTTATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCAATATTTATCAACAATAATCAATTCGAAGGCGAAATTCCTACAAATTTAGGTAACTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTCTGTTTCTGAATAATCAATTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTCACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCACTTATGGGTCATTTGCCTGATACATTGTCTTGTTTACAGAATATAGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAGTTATCTGACATAGTATGTTCTTTGAGAAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGTTCTAAGCTGTTTTTTAGGAATGTCGGTTTCGATTTTTCGCTTAATTGTATTCCTGGGAGGAACATGCAGAGACCACATCCTGAGTGTTCTATGATCCCAGGTGGTAGCTTAAGTTGTTTCAGAATTCCAACACCAAAGCCTCTTATTTGTGGTTCTATGTCTGTAAGTAATTCTAAGAACACTGATTCTACCTCGGAATCACATTCTCAAACACAATCTCCTTGA 1308 0.3547 MKNQNTLILSFFFLNLHLATTKAGFSVGGSVGVGVGVGSGVVWVGGGSNSNHNQNQNQNPKSYESPISKMDSAFSALQAWKSSITDDPLKILDSWVGSNVCSYKGIFCSNPENGNAMSSSSAESASLVVAGIDLNHANLQGTLVKELSLLTDISILHLNSNRFSGTVPETFKDLVFLQELDLSNNQLSGSFPLVTLYMQSLIYLDIRFNFFSGLLPQELFNKNLDAIFINNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIVCSLRSLANLTVAYNFFSGFSQQCSKLFFRNVGFDFSLNCIPGRNMQRPHPECSMIPGGSLSCFRIPTPKPLICGSMSVSNSKNTDSTSESHSQTQSP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1112 435 Pfam Leucine rich repeat N-terminal domain 72 109 IPR013210 -
Psa1g1112 435 Pfam Leucine rich repeat 154 209 IPR001611 GO:0005515
Psa1g1112 435 Gene3D Ribonuclease Inhibitor 247 368 IPR032675 -
Psa1g1112 435 PRINTS Leucine-rich repeat signature 177 190 - -
Psa1g1112 435 PRINTS Leucine-rich repeat signature 317 330 - -
Psa1g1112 435 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 428 - -
Psa1g1112 435 Gene3D Ribonuclease Inhibitor 71 246 IPR032675 -
Psa1g1112 435 PANTHER LRR/EXTENSIN 3 428 - -
Psa1g1112 435 SUPERFAMILY L domain-like 75 363 - -
Psa1g1112 435 ProSiteProfiles Leucine-rich repeat profile. 176 197 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1112 Psa-Chr1 75889182 75890489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1112 63 402 Leucine-rich Repeat extension Gene Families AT3G24480 47.688 7.76e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1112 - - gsj:114407518 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1112 1 75889182 75890489 Psa1g1112 1 75889182 75890489 ECH