Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1105 ATGTTCATTCTCTTTTTCATTTTCTTATTCACCTATGCAAATTCTCAATCTCAGTTATACAATCAAGAACATGAAATCCTATTAAACATAAAAAGTCACTTTCAAAATCCATCATTTCTAAGCCATTGGACAAAATCAAACACTTCTTCCCATTGTTCATGGCCAGAAATTGTTTGTGAAAATGACTCAATCACTTCACTTTCAATGATTAACACAAACATAAGCCAAACATTTCCACCTTTTCTTTGTGACCTCAAAAACCTCACTCACATTGATTTTCAATACAATTACTTTCCTTATGAGTTTCCAACTTCTCTTTACAATTGCTCCAAGCTTCAATACCTTGATCTCTCGCAGAACCTCTTCGTCGGTAACATACCGAACGATATTGATCGGTTGGGTCGTCTGCAGTTCCTTAGCCTCGGGGCAAACAGCTTTTCAGGTGATGTTCCTAGGAGTATTGGGAAGATGAAGAGTTTGAAAAATCTTCAACTTTATCAGTGTATGTTTAATGGTACTATTGCTGATGAAATTGGTGATTTGTTTAATCTTGAAACTTTGTTATTGTTCTCTAATGGTATGCTACCTAGAACAAAATTGCCATCCAGTTTCACAAAGTTGAAGAAATTAAAGATCTTTCATATGTATGACTCCAACTTGTTTGGTGAAATTCCTGAAACAATTGGTGAGATGGTGGCTTTGGAGGATTTGAATTTATCAGGAAACTTTCTTAGTGGAAAAATTCCAAATGGTTTGTTCACTTTGAAAAATTTGAGTATACTTTATTTGTACAAGAATAATCTTTCTGGAGTGATACCGGATGTGATTGAAGCGTTCGAGTTAACAGACTTGGATCTTTCGATGAATAATCTCACTGGTAAAATACCAGATGGCTTTGGAAACCTCGAAAAGCTAACCTCCTTGGGTTTGTTTGTGAATCAATTATCCGGGGAGGTTCCGGTAAGCATCGGTCGGCTGTCAGCTCTGACTGATTTTATTGTTTTTCAGAACAATTTATCTGGTAATCTTCCTCAAGATTTTGGAAGGTTTTCTAAACTTGAAACTTTTCAGATTGGATCTAATAGTTTCAAAGGAAATCTACCACAGAGTTTGTGTTATCATGGAAGGTTTGTTGGTTTAACTGCTTATGACAATAGTCTAAGCGGCGAGTTGCCGAAATCTTTAGGTAGTTGTAGCAGTTTACAATACCTGAGAGTTGAGAATAATGAGCTTTCTGGTAACATTCCTAATGGTTTATGGAGATCTATGAACTTGACAACAATTAGCATAAGCGAGAACAAGTTCACCGGTGAGCTTCCAGAAAGATTGTCGCCGAGTATTTCCAGACTTTCCATAAGTTACAATCGATTTTCTGGTAGAATTCCGAATGGAGTTTCTTCTTGGAAGAATGTAGTGGTGTTCGATGCTAGCAACAACTTTTTGAATGGAAGTATTCCATCGGAGTTAACATCGCTTCCTCAGCTAACAACTCTTCTAATCGATCATAACAAGCTCACCGATCGAATTCCATCGAATATAATATCATGGAAGTCTCTAATAAGTCTAGATTTGAGCAACAATCAACTCTCTGGAGAAATACCAGACGCAATTTGTCGGTTACCATCTCTTAACATGTTGGACTTATCAGAAAACAAAATCTCGGGCCAAATTCCACCTCAACTCAGGAGACTCACAAATCTAAATCTTTCCTGTAATTATTTCACAGGGAGGATTCCGAGTCATTTCGAAAACCCTGTGTATAACAGAAGCTTTCTGAACAATTCTGGTTTATGTGCTGATACATTAGTACTAAACCTTACTTTGTGCAATTCTGGAACTGCAAGGAGAAGTGATTCATCTACGCCTAAGGCTATGATCATAATCTTGGTGTTAGTAGCTTCTTTAACGGTTTTCTTGTTGATTTTCTCAATTATCAGTTTTTACAGAAAAAGAAAGAGAGGACTGAAAAGGACATGGAAGCTAACTTCCTTTCAGAGGCTCAGTTTCACAAAATCAAACATTGTGTTGTCGATGTCAGAAGATAATATCATTGGTAGCGGCGGATTTGGCTCTGTGTATCGCGTTGCTCTTGACGACGGTTTAGGTTATGTTGCAGTGAAAAAAATAAGGGGGAATAGCAGAAAGTTAGACCAGAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTAAGCAAAATTCGGCATAACAACATTGTGAAGTTGATGTGTTGTATCTCAAGTGATGATTCGCTACTACTTGTATATGAGTATCATGAACATCAGAGTCTTGATAGGTGGCTGCACAAAAAGAGTAAGACATCGGCTGCGTCCAGTACGGTTCATCATAACATCATTGATTGGCCGAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTATGCTACATGCATAACGATTGCTCGCCGCCTATTGTTCACCGAGACGTGAAAACAAGTAACATTCTTTTGGATTCACAATTCAACGCAAAAGTTGCTGATTTCGGTCTCGCCAGAATACTGATCAAGCCAGAAGAACTTGCCACCATGTCAGCTGTGGCTGGCACATTTGGATATATTGCTCCAGAATATGCTCAAACAATTAGAGTCAATGAGAAGATAGATGTTTACAGCTTTGGAGTAGTTCTATTGGAACTGACAACTGGAAAAGAAGCTAATCATGGAGACGAACACTCGTCGCTTGCAGAATGGGCGTGGCGCCATATTCAGATAGGAACCGATATAGAAGAGCTTCTGGACGAAGATGCTGTGGAACCAAGTAACTTGATTGAAATGATCAACATCTTCAAACTCGGGGTTATGTGCACTTCAACACTGCCGGCTAGTAGACCATCAATGAAGGAAGTCTTGAAGATATTGATCGGTTGCAGAGATCCGCAAGCCAATGCGGAGAAGATTGTTGATATCTATGATGATGCTCCACTTCTTAAGAATTTGAAATGGGAAAAGCAGGTGGAATATTCAGAATAA 2994 0.3841 MFILFFIFLFTYANSQSQLYNQEHEILLNIKSHFQNPSFLSHWTKSNTSSHCSWPEIVCENDSITSLSMINTNISQTFPPFLCDLKNLTHIDFQYNYFPYEFPTSLYNCSKLQYLDLSQNLFVGNIPNDIDRLGRLQFLSLGANSFSGDVPRSIGKMKSLKNLQLYQCMFNGTIADEIGDLFNLETLLLFSNGMLPRTKLPSSFTKLKKLKIFHMYDSNLFGEIPETIGEMVALEDLNLSGNFLSGKIPNGLFTLKNLSILYLYKNNLSGVIPDVIEAFELTDLDLSMNNLTGKIPDGFGNLEKLTSLGLFVNQLSGEVPVSIGRLSALTDFIVFQNNLSGNLPQDFGRFSKLETFQIGSNSFKGNLPQSLCYHGRFVGLTAYDNSLSGELPKSLGSCSSLQYLRVENNELSGNIPNGLWRSMNLTTISISENKFTGELPERLSPSISRLSISYNRFSGRIPNGVSSWKNVVVFDASNNFLNGSIPSELTSLPQLTTLLIDHNKLTDRIPSNIISWKSLISLDLSNNQLSGEIPDAICRLPSLNMLDLSENKISGQIPPQLRRLTNLNLSCNYFTGRIPSHFENPVYNRSFLNNSGLCADTLVLNLTLCNSGTARRSDSSTPKAMIIILVLVASLTVFLLIFSIISFYRKRKRGLKRTWKLTSFQRLSFTKSNIVLSMSEDNIIGSGGFGSVYRVALDDGLGYVAVKKIRGNSRKLDQKLVDSFLAEVEILSKIRHNNIVKLMCCISSDDSLLLVYEYHEHQSLDRWLHKKSKTSAASSTVHHNIIDWPKRLHIAIGAAQGLCYMHNDCSPPIVHRDVKTSNILLDSQFNAKVADFGLARILIKPEELATMSAVAGTFGYIAPEYAQTIRVNEKIDVYSFGVVLLELTTGKEANHGDEHSSLAEWAWRHIQIGTDIEELLDEDAVEPSNLIEMINIFKLGVMCTSTLPASRPSMKEVLKILIGCRDPQANAEKIVDIYDDAPLLKNLKWEKQVEYSE* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1105 997 ProSitePatterns Protein kinases ATP-binding region signature. 684 708 IPR017441 GO:0005524
Psa1g1105 997 ProSiteProfiles Protein kinase domain profile. 678 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1105 997 Pfam Protein kinase domain 680 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1105 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Psa1g1105 997 SMART serkin_6 678 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1105 997 SUPERFAMILY RNI-like 283 585 - -
Psa1g1105 997 Gene3D Transferase(Phosphotransferase) domain 1 760 981 - -
Psa1g1105 997 Gene3D Ribonuclease Inhibitor 132 196 IPR032675 -
Psa1g1105 997 SMART LRR_typ_2 231 255 IPR003591 -
Psa1g1105 997 SMART LRR_typ_2 492 516 IPR003591 -
Psa1g1105 997 SMART LRR_typ_2 540 564 IPR003591 -
Psa1g1105 997 SMART LRR_typ_2 398 422 IPR003591 -
Psa1g1105 997 SMART LRR_typ_2 133 157 IPR003591 -
Psa1g1105 997 SUPERFAMILY Protein kinase-like (PK-like) 678 961 IPR011009 -
Psa1g1105 997 Gene3D Ribonuclease Inhibitor 197 333 IPR032675 -
Psa1g1105 997 Gene3D Ribonuclease Inhibitor 22 131 IPR032675 -
Psa1g1105 997 Pfam Leucine Rich Repeat 234 252 IPR001611 GO:0005515
Psa1g1105 997 SUPERFAMILY L domain-like 30 372 - -
Psa1g1105 997 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 989 - -
Psa1g1105 997 Pfam Leucine rich repeat 257 315 IPR001611 GO:0005515
Psa1g1105 997 Pfam Leucine rich repeat 493 553 IPR001611 GO:0005515
Psa1g1105 997 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 989 - -
Psa1g1105 997 PRINTS Leucine-rich repeat signature 519 532 - -
Psa1g1105 997 PRINTS Leucine-rich repeat signature 540 553 - -
Psa1g1105 997 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Psa1g1105 997 Gene3D Ribonuclease Inhibitor 334 607 IPR032675 -
Psa1g1105 997 Gene3D Phosphorylase Kinase; domain 1 661 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1105 Psa-Chr1 75579218 75582303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1105 23 994 Receptor kinase-like Gene Family AT5G25930 51.574 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g1105 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1105 - - gmx:100785907 1405.19