Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1100 ATGGGAAGAAAATGCTCACATTGTGGAAACATAGGTCATAATTCAAGAACTTGTAATACTTTAAGAGGATATGGTAACAATTTTCTTGGAGTTAGACTCTTTGGAGTTCAACTAGATTTATCATCTTCATGTGTTTCCATGAAAAAGAGTTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCTTCTTCTTCATTTTCTTCTTCAAGATTAACCATTGACGATAGAGCTTCTATTGGTTATCTCTCCGATGGTCTCATAGTTCGAGCCCAAGAAAGAAAGAAAGGAGTTCCTTGGACGGAAGAAGAGCATAGAAAATTTCTTGTGGGACTTGAAAAGCTTGGAAAAGGAGATTGGAGAGGTATCTCAAGAAGCTATGTGACAACAAGAACACCAACACAAGTTGCAAGCCATGCTCAAAAATACTTTATAAGACTTTCAACTTTGAATAAGAAGAAAAGACGTTCAAGTCTCTTTGACATGGTTGGTAGCATCAACACAAACACAACGGTTGATTCAATCAACAGGTGTAAAAGGCATGATGATGAAGTTAAGAAAGATGCAACTTTATCACTTCTAAGAACCTCATTTCAACATCAAGAAACAAAATCAACCCAAGTTGAAGTTTGTGCAGAAGAAGAACATGAAGATGTGCCTAATTGGTTACAACCTTTAACAAAATCTTTGAATATGACATTGGTGATACCAAATTCTTCAAATGCAACAACACCACCTGATCTTGAGCTTACTCTTGCAGTTCCCAAGTCTAACAACATGGAACAAGATAAAACTTCCAAGAGTTCTTTCTTTAATGGTCCAATTAGTGTCACTTAA 837 0.3596 MGRKCSHCGNIGHNSRTCNTLRGYGNNFLGVRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPSSSFSSSRLTIDDRASIGYLSDGLIVRAQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKYFIRLSTLNKKKRRSSLFDMVGSINTNTTVDSINRCKRHDDEVKKDATLSLLRTSFQHQETKSTQVEVCAEEEHEDVPNWLQPLTKSLNMTLVIPNSSNATTPPDLELTLAVPKSNNMEQDKTSKSSFFNGPISVT* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1100 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
Psa1g1100 278 MobiDBLite consensus disorder prediction 257 278 - -
Psa1g1100 278 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Psa1g1100 278 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 274 - -
Psa1g1100 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Psa1g1100 278 SUPERFAMILY Homeodomain-like 93 148 IPR009057 -
Psa1g1100 278 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Psa1g1100 278 Gene3D - 98 150 - -
Psa1g1100 278 CDD SANT 99 144 IPR001005 -
Psa1g1100 278 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Psa1g1100 278 PANTHER TRANSCRIPTION FACTOR KUA1 1 274 - -
Psa1g1100 278 SMART sant 96 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1100 Psa-Chr1 75300559 75302168 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g1100 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1100 - - gmx:778052 271.552