Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1093 ATGTCACTCCAACAACCCGTGACATCTCAAACTTCTGTCATTGCTCCAACTTTGTTTATATATATACACACACCAAAGCACCAACTAATTTCTAATAGCACTTCAACTTCCAAAAAACTACATTCTCCATCATTATTAATTTTCACATTCTTCTCTCCAAGAATGTCAAAAAAGCATTCCATTTTCAGCACATTAACATTTCTTCTTGTTTTTGTGCAAAATCTAAGCACAATAGAATGTCATACAAAGGGAATTCGACCAATACATTCAACAGGAAACGGTTTAACAACCAACAATACAACAAGAACAGAGTTATCAGAACAACAGTTCATGAAATGGGTGAGTTATGTTGGTGATCTCAAACACACAGTTTTCAAGACTGCAAAAAACAAGCTCTTTGCTTCATACACTTTGCACGTTTCTAAGAATCCTTCTATTGGAGATTTCACTACAATTCAAGATGCCATTGATTCTCTTCCTCCTATCAATCTTGTTCGAGTTGTCATCAAAGTTCATGCAGGAGTTTACATGGAGAAAGTTAACATTCCTCCATTGAAATCTTTCATAAGCATAGAAGGAGATGGAGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGACTCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAGAACATCACATTCCAAAACACATTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTAGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGATGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATCTTGGTAGACATTACTATAAAGATTGTTACATTGAAGGCTCTGTTGATTTCATCTTCGGCAATGCTCTCTCCCTCTTCGAGGGATGTCACGTGCACGCGATAGCGAGAAATACAGGAGCACTAACGGCACAAGGAAGGAGTAGTATATTACAAGACACAGGATTCTCATTTGTGAACTGTAAGGTCACGGGTTCAGGGGCACTGTACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTGTGTTTGCTTATACAAATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACCAGGAGCAAGTTTTGCAGGAAGAGTATCATGGTCAAGAGAACTCACTGA 1215 0.3877 MSLQQPVTSQTSVIAPTLFIYIHTPKHQLISNSTSTSKKLHSPSLLIFTFFSPRMSKKHSIFSTLTFLLVFVQNLSTIECHTKGIRPIHSTGNGLTTNNTTRTELSEQQFMKWVSYVGDLKHTVFKTAKNKLFASYTLHVSKNPSIGDFTTIQDAIDSLPPINLVRVVIKVHAGVYMEKVNIPPLKSFISIEGDGADTTIVQWGDTAQTPGPRGTPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSILQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTNMDNIIIPKGWYNWGDPNREMTRSKFCRKSIMVKRTH* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1093 404 Pfam Pectinesterase 146 383 IPR000070 GO:0030599|GO:0042545
Psa1g1093 404 Gene3D - 87 401 IPR012334 -
Psa1g1093 404 PANTHER PECTINESTERASE 62 389 - -
Psa1g1093 404 ProSitePatterns Pectinesterase signature 2. 293 302 IPR033131 -
Psa1g1093 404 SUPERFAMILY Pectin lyase-like 134 389 IPR011050 -
Psa1g1093 404 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1093 Psa-Chr1 75104775 75107774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1093 97 381 Carbohydrate Esterase AT5G47500 44.211 4.91e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1093 K01051 - qsu:112033938 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1093 1 75104775 75107774 Psa1g1093 1 75104775 75107774 ECH