Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1087 ATGAAAATATCAACATTTTCATTTCACTATATTCTAGCCTTTTTTCTCATTATTCTAACCCATGCAAAATCTCAATCTTATTACAATCTTAATAATCAAGAACATGAAACCCTAATGAAGATCAAACACCATCTTGAAAACCCACCAAGCCTTACTCACTGGACTTCATCAAACACCTCTCACTGTTCTTGGCCAGAGATCAATTGCACCAATGGTTCCATCACATGGTTGACTTTGGTCAACTACAACATCACTCAAACCGTACCCTCTTTCATATGTGACCTTAAAAACCTCACACATGTTGATTTCAACAACAACTACATACCTGGGATGTTTCCAACCTATCTATACAATTGTTCAAACTTGGAGTTTCTTGATTTGTCTATGAACAATTTTGTTGGAAAGATTCCTAATGATATTTCCAGTTTATCTAATTTGAATTATCTTAATCTTAGTTACACTAATTTCAATGGTGGAATTCCTTCTAGTGTTGGAAGGTTAAAGGATTTGAGATTTCTTGCACTTCAAGCTTGTCTCTTTGATGGAACTTTCCCTGATGAGATTGGAAATTTGTTGAATCTTGAAACATTGGATTTGTCGTCAAATCCATTTAAGGCTTCTAAGTTGTCGATGAATTGGACGAAGTTGAGTAAATTGAAGGTGTTTTATATGTATGACTGCAATCTGTTTGGTGAAATGCCTGAACTAATAGGAAATATGGTTTCTTTGGAGGATTTGGATTTGTCACAAAATGATTTAACTGGGAAAATCCCTAGTGGTTTGTTCATGTTGAAGAATCTCAATAGATTGTTACTTTCAAGAAATAGTCTTTCCGGAGAGTTGCCTGATGTGGTTGGCGCGTTAAATTTGGCTATCATTGATCTTGCACAGAATCAGCTTACAGGAAAAATACCAGAAGATTTTGGAAAGCTGCAAATGTTAACTGGCTTGTCTTTGCCTGTGAATAATTTTTCAGGAGAGATTCCACAAAGCATAGGTCGTCTTCCATCTTTAATTGATTTTAAGGTCTTTATAAACAACTTGTCAGGTACACTTCCTCCTGATTTTGGTCTATACTCAAAGCTAAGAAGTTTTCATGTTGCATCGAACAGTTTTAAGGGAAGGTTACCAGAGAATTTGTGCCATCACAGAGAGTTACAAAATTTAACTGCTTATGACAATCATCTAAGTGGAGAGTTACCAGAATCACTTGGAAATTGTAGTAGCTTGTTGGAGATGAAAATTTTCCATAATGAGTTTTATGGTAAAATTCCGAATGGTCTTTGGAGAGCTGAAAATTTGGTGCTTTTCATGGTAAGCCATAATAAGTTCAGTGGTGAACTTCCTCAAAATTTGTCTTCAAGTATTTCACTTTTTGATATAAGTTACAATCAGTTTTATGGTGGAATTCCAATTGGAATATCTGATTGGACTAATGTGGTTGAGTTCATAGCTAGCAAGAATAATCTTAATGGAAGTATTCCTCAAGAACTAACAGCACTTCCTAATCTTCAAAAATTGTTGCTTGATCAAAATCAACTCAAAGGGTCACTTCCATTTGATGTAATATCGTGGAACTCATTAGTGACTCTAAATTTGAGCCAAAACCAACTTAATGGAGAAATTCCGGTTTCAATTGGTCATATACCTTCTCTTAGTGTTCTTGATCTATCGGAAAATCAATTCTCTGGCGATATACCTTCTATACTTCCTAGACTTACAGTTTTCAATCTATCGTCCAATCATTTAAGAGGAAGAGTTCCTAGTGAATTTGAAAATTCAGCTTATGATAGAAGCTTTTTGAATAATGCTGGTTTATGTGCTGATACGCCAGCATTGAACCTTACCTTATGCAATGCTAATTCCAACGCTCAAAGGAAAAGCAAAGACTCGTCTTTATCTCCTACTTTGATTGTAGTCTTGGTTGTAGTTTCCATCTTAGTGGCTTCATTGATATCATTCATGATTATCAAACTTCACCGTAAAAGAAAGCAGGGATTTGATAACTCATCATGGAAACTCACTTCATTTCAAAGACTAAATTTCACCGAATCAGATATAGTATCTTCAATGACAGAACATAATATTATCGGAAGTGGTGGATATGGAACTGTTTATAGAGTTGTGGTTGATGGATTAGGCTATGTAGCGGTGAAAAAGATCTGGGAAAACAAAAAACTAGACAATAATCTTGAGAAATCATTTCACACTGAGGTTAAAATATTAAGCAGCATCCGACATCGAAACATTGTGAAGTTGTTGTGTTGTATCTCTAATAATGATACGATGCTACTTGTTTACGAGTACGTCGAAAACCGGAGTCTTGATAGATGGCTGCAAAAGAAGATTAGTCTCAAGTCTTCAAATGTGCTGTCAAGTTCGGTTCATCATGTTATTCTTGATTGGACAAAGAGAATGCATATAGCTATTGGTGTAGCTCAAGGTTTGAGCTATATGCATCATGAATGTTCACCACCTGTTGTTCATAGAGATGTGAAAACAAGTAACATTCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGTTTGGCTAGGATGTTGATACAGCCTGGTGAGCTTGCTACTATGTCTGCTGTTATTGGCTCATTTGGCTATATGGCTCCAGGTAAAATTCATGACATTCCAATCATCATTTTTTAA 2667 0.3547 MKISTFSFHYILAFFLIILTHAKSQSYYNLNNQEHETLMKIKHHLENPPSLTHWTSSNTSHCSWPEINCTNGSITWLTLVNYNITQTVPSFICDLKNLTHVDFNNNYIPGMFPTYLYNCSNLEFLDLSMNNFVGKIPNDISSLSNLNYLNLSYTNFNGGIPSSVGRLKDLRFLALQACLFDGTFPDEIGNLLNLETLDLSSNPFKASKLSMNWTKLSKLKVFYMYDCNLFGEMPELIGNMVSLEDLDLSQNDLTGKIPSGLFMLKNLNRLLLSRNSLSGELPDVVGALNLAIIDLAQNQLTGKIPEDFGKLQMLTGLSLPVNNFSGEIPQSIGRLPSLIDFKVFINNLSGTLPPDFGLYSKLRSFHVASNSFKGRLPENLCHHRELQNLTAYDNHLSGELPESLGNCSSLLEMKIFHNEFYGKIPNGLWRAENLVLFMVSHNKFSGELPQNLSSSISLFDISYNQFYGGIPIGISDWTNVVEFIASKNNLNGSIPQELTALPNLQKLLLDQNQLKGSLPFDVISWNSLVTLNLSQNQLNGEIPVSIGHIPSLSVLDLSENQFSGDIPSILPRLTVFNLSSNHLRGRVPSEFENSAYDRSFLNNAGLCADTPALNLTLCNANSNAQRKSKDSSLSPTLIVVLVVVSILVASLISFMIIKLHRKRKQGFDNSSWKLTSFQRLNFTESDIVSSMTEHNIIGSGGYGTVYRVVVDGLGYVAVKKIWENKKLDNNLEKSFHTEVKILSSIRHRNIVKLLCCISNNDTMLLVYEYVENRSLDRWLQKKISLKSSNVLSSSVHHVILDWTKRMHIAIGVAQGLSYMHHECSPPVVHRDVKTSNILLDAQFNAKVADFGLARMLIQPGELATMSAVIGSFGYMAPGKIHDIPIIIF* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1087 888 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Psa1g1087 888 Gene3D Ribonuclease Inhibitor 360 627 IPR032675 -
Psa1g1087 888 SUPERFAMILY Protein kinase-like (PK-like) 683 879 IPR011009 -
Psa1g1087 888 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 880 - -
Psa1g1087 888 SUPERFAMILY RNI-like 289 590 - -
Psa1g1087 888 SUPERFAMILY L domain-like 40 349 - -
Psa1g1087 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Psa1g1087 888 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Psa1g1087 888 Pfam Protein kinase domain 693 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1087 888 SMART serkin_6 691 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1087 888 Gene3D Ribonuclease Inhibitor 209 357 IPR032675 -
Psa1g1087 888 Gene3D Ribonuclease Inhibitor 31 208 IPR032675 -
Psa1g1087 888 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 10 880 - -
Psa1g1087 888 ProSiteProfiles Protein kinase domain profile. 691 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1087 888 SMART LRR_typ_2 501 525 IPR003591 -
Psa1g1087 888 SMART LRR_typ_2 95 119 IPR003591 -
Psa1g1087 888 SMART LRR_typ_2 240 264 IPR003591 -
Psa1g1087 888 SMART LRR_typ_2 143 167 IPR003591 -
Psa1g1087 888 SMART LRR_typ_2 191 214 IPR003591 -
Psa1g1087 888 SMART LRR_typ_2 570 593 IPR003591 -
Psa1g1087 888 Gene3D Transferase(Phosphotransferase) domain 1 677 883 - -
Psa1g1087 888 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1087 Psa-Chr1 74904081 74907683 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1087 34 877 Receptor kinase-like Gene Family AT5G25930 48.769 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g1087 Pkinase 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1087 - - cam:101515509 1352.81