Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1085 ATGACAATATTACCCACATCCCATATCAAAATTTCACTTTACTTTCATGTAGCCACCTTCTTTCTAATTTTGAGCCTTGCAAATTCTCAGTCTCAACAAGAACATTCAATCCTATTGAAGATAAAGCTTCACCTTCAAAATCCATCTTTTCTTACTCATTGGAACTCATCAAACACCTCCTATTGTTCTTGGCCAGAGATAACATGCACCACTGGTTCTGTCACAGGGTTGACTTTGGTCAACTCAAGCATAACTCAAACCATACCTTCTTTCATATGCGACCTTCAAAATCTCACACATGTTGATCTCAGCTACAATCTCATTCCTGGTGAGTTTCCAAAAGATCTATTCAAATGTTCCAATCTTGAGTATCTTGATTTGTCTTTTAACAACTTTGTTGGCAAGATTCCTTATGATATTCAAAGTCTGGTTCATTTGCAATATCTCAACCTTAGTTCAACCAATTTCGATGGCGAAATTCCTTCCAGTATTGGAAAGCTTAAGGATTTGAGATTCCTTGGCCTTAAATATTGCTCATTCAATGATACTTTTCCTTTTGAGGTAATTGGTGACTTGTTCAACCTTGAGTTCTTTGATTTGTCCTCCAATCCTTTGCTTCCTTTGAAGCTTCCATTAAGCTTAACCAAGTTGAAAAAATTGAAGTTTTTTATCATACATGCGTCAAATTTGGTAGGGGAAATTCCTGAAAATATTGGAGATATGGTTGCATTGGAGAAATTGGATTTATCAGAAAATAATTTAACAGGAAAAATTCCTAGTGGTTTGTTCATGCTGAAGAATTTGAGCATAGTGTACCTTAACAGCAATAATCTCTCGGGGGAGATACCGAGTTCGGTTGAAGCGTTGAATTTGACAACAATTGATCTTGCAAGAAATAGTCTCTCAGGGAAAATACCGAACGATTTTGGAAAGCTTCAAAAGTTATCAGTGTTGCATTTGCACATGAACAATTTTTCAGGAGAGATTCCAGAAAGCATAGCTCGTCTTGAATCTTTGACAGAGTTTAATGTTTTTATGAACAAGTTTTCAGGTACTCTTCCTATGGGTTTTGGCCTTTTTTCAAAGCTTGAATTTTTTCATATTGCGGTGAACAGTTTTAACGGAAAGTTACCGGAGAATTTGTGCTATCATGGTAAGCTACAAAATTTAACTGTTTATGAAAATAGTTTAAGTGGTGAGTTACCAAAATCACTTGGAAATTGTAGTAGTTTGGTTGAGCTGAAAGTTGACAAGAATCATTTTTCTGGTCAAATTCCTAATGGACTTTGGAGAGCTGAAAATTTGGTGAGTTTCATGATAAGTCATAATAAGTTCAATGGTGAGCTTCCTCAGAATTTGTCTTCAAGCATTTCACTTTTTGATATAAGTTATAATCAGTTTTATGGTGGAATTCCAATTGGAGTAGCTTCTTGGACTAATGTGGTTAAGTTCATAGCTAGCAAGAATAATCTTAATGGAAGTATTCCTCAAGAGCTAACAGCACTTCCTAATCTTGAAAGATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCAAATGATATAGTATCATGGAAATCATTAGTGATTCTAAATTTGAGCCAGAATCAACTTATTGGTGAAATTCCAAGTTCAATTGGTCATTTAGCTTCGCTTAGTGCTCTCGATCTATCAGAAAATCAATTCTCGGGTGAGATACCTTCTATACCTACTAGAATCACAGATCTCAATCTATCGTCGAATTACTTGACAGGAAAAGTTCCTAGTGATTTTGAAAATTCAGCTTTTGATAGAAGCTTTTTGAATAATTCTGGTTTATGTGCCGATACACCAAAACTTAGTCTTAGCCTTTGCGGATTCGGCCTTGAAAAATCAACCAAAACCTCACATTGGTCTATTGGTTTGATTATTAGCCTTATTGTTGTGACTTTCTTGTTGGCTTTGTTTGCATCATTCATGATTATCAAACTTTACAAGAAAAGAAATCACGAATCGGAAAGTTCATGGAAGCTCATTTCATTTCAAAGGCTAAGTTTCACAGAATTAGACATACTTTCCTCAATGACAGAACAAAATATCATCGGCAGCGGTGGATTCGGCACGGTATACCGTGTTCCTGTCAACGGTTTAACCTATGTGGCTGTCAAAAAAATCATGAGTAACAGAAAGTTAAGGCAAAAGCTCGAAACTTCATTTCATGCGGAAGTTAAAATATTGAGCAATATTCGTCATCGAAACATTGTGAAGTTGTTGTGTTGCATCTCTAATGAGGACTCCATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAATGGCTGCACAACAAGAATAAGTCAGGTTCCGCGCGACATGTTGTCCTTGATTGGCCGAAGCGATTGCAAATCGCCATTGGAATTGCTCATGGTTTGTGCTACATGCATCATGATTGCTCGCCTCCGATTGTTCATCGCGATATAAAAACAAGCAACATACTTTTGGATTCTCAATTCAACGCAAAAGTTGCCGATTTCGGTCTTGCTAGATCGTTGATGAAACCCGAAGAATTTAACACCATGTCAGCTGTTATTGGATCATTTGGTTATATGGCTCCAGAATACGTTCAAACAACTAAAATCAACGAAAAGATTGATGTGTTTAGCTTTGGTGTGATCCTATTGGAGCTAACAACCGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCACTTGTAGAATGGTCATGGAGACATGTTCTTGTAGGAAGCAATATAGAAGATTTGTTGGACAAAGATTTTGTGGAACCAAGTTGTTTGGATGAAATGTGTTGCATTTTCAAACTTGGGATAATGTGTACTTCTACACTTCCTTCTAGTAGACCTTCCATGAAGGAAGTGTTGCACTTATTGGTTAGAAGTGAAAGAGGGTTTGTGTTTGGAGGTAGGAATGATGTTGGAGAATATGATGTTGTTCCTTTTCTTAAAAATTCTAAATTGAATAGTAGGAGGATTGATATTGTTGATAGTGATAGTGATAGTGACTAG 3033 0.3653 MTILPTSHIKISLYFHVATFFLILSLANSQSQQEHSILLKIKLHLQNPSFLTHWNSSNTSYCSWPEITCTTGSVTGLTLVNSSITQTIPSFICDLQNLTHVDLSYNLIPGEFPKDLFKCSNLEYLDLSFNNFVGKIPYDIQSLVHLQYLNLSSTNFDGEIPSSIGKLKDLRFLGLKYCSFNDTFPFEVIGDLFNLEFFDLSSNPLLPLKLPLSLTKLKKLKFFIIHASNLVGEIPENIGDMVALEKLDLSENNLTGKIPSGLFMLKNLSIVYLNSNNLSGEIPSSVEALNLTTIDLARNSLSGKIPNDFGKLQKLSVLHLHMNNFSGEIPESIARLESLTEFNVFMNKFSGTLPMGFGLFSKLEFFHIAVNSFNGKLPENLCYHGKLQNLTVYENSLSGELPKSLGNCSSLVELKVDKNHFSGQIPNGLWRAENLVSFMISHNKFNGELPQNLSSSISLFDISYNQFYGGIPIGVASWTNVVKFIASKNNLNGSIPQELTALPNLERLLLDQNQLKGSLPNDIVSWKSLVILNLSQNQLIGEIPSSIGHLASLSALDLSENQFSGEIPSIPTRITDLNLSSNYLTGKVPSDFENSAFDRSFLNNSGLCADTPKLSLSLCGFGLEKSTKTSHWSIGLIISLIVVTFLLALFASFMIIKLYKKRNHESESSWKLISFQRLSFTELDILSSMTEQNIIGSGGFGTVYRVPVNGLTYVAVKKIMSNRKLRQKLETSFHAEVKILSNIRHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNKSGSARHVVLDWPKRLQIAIGIAHGLCYMHHDCSPPIVHRDIKTSNILLDSQFNAKVADFGLARSLMKPEEFNTMSAVIGSFGYMAPEYVQTTKINEKIDVFSFGVILLELTTGKEANYGDEHSSLVEWSWRHVLVGSNIEDLLDKDFVEPSCLDEMCCIFKLGIMCTSTLPSSRPSMKEVLHLLVRSERGFVFGGRNDVGEYDVVPFLKNSKLNSRRIDIVDSDSDSD* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1085 1010 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 998 - -
Psa1g1085 1010 Pfam Leucine Rich Repeat 529 550 IPR001611 GO:0005515
Psa1g1085 1010 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515
Psa1g1085 1010 SUPERFAMILY L domain-like 244 570 - -
Psa1g1085 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Psa1g1085 1010 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 998 - -
Psa1g1085 1010 SUPERFAMILY L domain-like 42 350 - -
Psa1g1085 1010 SMART LRR_typ_2 502 526 IPR003591 -
Psa1g1085 1010 SMART LRR_typ_2 550 577 IPR003591 -
Psa1g1085 1010 SMART LRR_typ_2 241 265 IPR003591 -
Psa1g1085 1010 SMART LRR_typ_2 312 336 IPR003591 -
Psa1g1085 1010 SMART LRR_typ_2 95 119 IPR003591 -
Psa1g1085 1010 SMART LRR_typ_2 143 167 IPR003591 -
Psa1g1085 1010 Pfam Leucine rich repeat 75 132 IPR001611 GO:0005515
Psa1g1085 1010 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Psa1g1085 1010 Gene3D Ribonuclease Inhibitor 190 474 IPR032675 -
Psa1g1085 1010 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Psa1g1085 1010 Gene3D Ribonuclease Inhibitor 475 616 IPR032675 -
Psa1g1085 1010 Pfam Protein kinase domain 691 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1085 1010 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Psa1g1085 1010 SMART serkin_6 689 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1085 1010 Gene3D Transferase(Phosphotransferase) domain 1 768 973 - -
Psa1g1085 1010 ProSiteProfiles Protein kinase domain profile. 689 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1085 1010 Gene3D Phosphorylase Kinase; domain 1 659 767 - -
Psa1g1085 1010 PRINTS Leucine-rich repeat signature 244 257 - -
Psa1g1085 1010 PRINTS Leucine-rich repeat signature 550 563 - -
Psa1g1085 1010 SUPERFAMILY Protein kinase-like (PK-like) 678 966 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1085 Psa-Chr1 74852094 74855642 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1085 34 1008 Receptor kinase-like Gene Family AT5G25930 49.240 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g1085 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1085 - - cam:101515509 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1085 1 74852094 74855642 Psa1g1085 1 74852094 74855642 ECH