Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1072 ATGAGTTCTGAAAAAGAGGGGGAGGTGAGGAAATCAAAAGAGGGAGGTTCAATAAGTATTATTTTGAGATATAGTGATTGGATTGATGTTATTTTAATGTTGATGGGTGCATTGGGAGCAATTGGAGATGGAATGTCAACAAATGTTTTGCTTCTCTTTGCTAGCCGTATTATGAACAGCTTAGGTTACAATAATAATAGTGACACTAATTCCATGAATGAAGTTGAAAAGTGTAGCTTATATTTTGTCTACTTGGGATTGACAACTATGGTGGTGGCTTTTTTAGAAGGATATTGTTGGAGCAAAACAAGTGAGAGGCAAGTGTTGAGAATTAGGTACAAGTATTTGGAAGCTGTTCTTAGACAAGAAGTTGGTTTTTTTGATTCACAAGAAACAAACACTTCTGAAATCATTAATAGCATATCAAAGGACACTAATCTAATCCAAGAAGTTCTAAGTGAAAAGGTTCCTTTATTTTTGATGCAATCATCATCATTCATATCAGGGATAGCTTTTGCAACCTACTTTTCATGGAGATTAGCATTAGTAGCATTTCCAACACTCATCTTACTCATAATCCCAGGCATGATATATGGAAAATACCTAATCTACTTATCAAAATCATCCATGAAAGAGTATGGCAAAGCAAATGCAATTGTTCAACAAGCATTAAGCTCAATAAAAACAGTGTATTCATTCACAGCAGAGAAGAGAACAATGGAGAAATATTCAGAAATATTAGATAGAACTTCAAAGCTAGGAGTAAAACAAGGTATTGCTAAGGGTGTTGCAGTTGGAAGCATTGGTTTGTCTTTTGCAATTTGGGGGTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGAGAGAGTGGTGGAAGAATTTATGCTGCTGGAATTTGCTTCATTATGAGTGGATTGTCCTTAGGAGTGGTACTTCCGGATTTGAAATACTTCACAGAAGTATCAATTGCTGCATCAAGAATATTTGCAATGCTTGATAGAACACCAGAGATTGACGGTGAAGACACAACAAAAGGAACCACATTACAAACAATTAACGGAAACTTAAATTTCGAACATGTAAAATTCACATACCCTTCGCGTCAAGAAACTATTGTACTATGTGATTTCAATCTTCAAATCGAAGCGGGAAAAACTGTTGCATTAGTCGGTGCAAGCGGAAGCGGTAAGTCGACCGTAATAGCATTAGTACAAAGATTTTATGATGCTAATGAAGGTGTTGTTAGGGTGGACGGTTTTGATATAAAGAGTTTGCAGTTGAAATGGTTGAGAAGTAAAATGGGACTTGTGAGTCAAGAACATGCCATGTTTGGGACTTCTATTAAGGAGAATATTATGTTCGGAAAAAATGATGCTACTGTGGATGAGATTGTTGCTGCTGCTACGGCCGCTAATGCTCATAATTTCATTAGACAGCTTCCTGATGGTTATGAAACTAAAATTGGAGAGAGGGGTGCACTTCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCAAGAGCAATCATAAAAAATCCAGTAATTCTTCTACTTGATGAAGCTACTAGTGCACTTGATTCTGAATCTGAATTATTGGTTCAAAATGCTCTTGATCAAGCTTCTTTGGGAAGAACTACTTTGGTTGTTGCACACAAACTATCAACAATCAGAAATGCAGACCTAATAGCAGTTGTAAGCAATGGTTGTATCATTGAAACTGGGACACACAATGAACTCATCAACACACCAAATGGCCATTATGCAAAGTTAGCAAAACTACAAACACAATTAAGCATTAATGATGATCAAGATCAAATTCAAGAACAACAATCCATTCTTCTTTCTGCAGCAAGAACTAGTGCAGGTAGAACAAGCACTGCAAAATCAAGTCCGAAATCGCCATTACCTAATGATGTTAATCCAATCGCCATATCTAAAATCTCTCATTCGTCGCCTTCGTTTTCAAGGCTACTTTTCTTGAATTCGCCTGAATGGAAACAAGGACTAATTGGAACACTTTCGGCTATAGCCTTTGGTTCGATTCAACCTTTGTATGCATTAACAATCGGTGGAATGATTTCGGCTTTTTTCGCTAAAAGTCATCAAGAAATGAAACACAGAATCATGAACTATTCGTTGATTTTCACTTCTCTATCGGTTGCTTCGATTACACTCAATCTCATACAACACTACAATTTTGCTTATATGGGAGCAAAGTTAACAAAAAGGATAAGATTGCGTATGTTGGAGAAAATCTTAACCTTCGAAACTGCTTGGTTTGATGAAGAGAAAAATTCTAGTGGAGCATTGTGTTCGAGGTTAAGCAACGAAGCTTCGATGGTGAAATCGCTCGTTGCTGATAGAGTTTGTTTACTCGTTCAAACGGCTTCCTCTGTCACAATCGCGATGATCATAGGACTTGTCGTAGCATGGAAGCTAGCTCTTGTTATGATCGCGGTTCAACCGCTTACGATACTTTGTTTTTATACGCGAAAGGTTTTGCTTTCTACGCTTTCGACTAAATTCGTTAAGGCGCAGAACCAAAGCACGCAGATCGCGGTCGAGGCGGTTTATAATCACAGAATTGTAACTTCATTCGGAAGCATCACAAAAGTTTTGAGACTGTTCGACGAGGCGCAAGAGGCGCCGAGGATGGAAGCTAGGAAGAAATCATGGCTAGCTGGGATTGGTATGGGATCTGCTCAGTGTGTGACGTTTATGTGTTGGGCTTTGGATTTTTGGTATGGTGGAAAATTGGTTCAAAAGAGAGAAATTTCTTCTGGTGATGTGTTTAAAACCTTTTTTGTTTTGGTTAGTACCGGAAAAGTTATAGCTGAAGCTGGTAGCATGACTTCTGATCTTGCTAAAAGTTCAACTGCTGTTGCATCTGTGTTTGAAATTCTTGATAGACAATCACTTATTCCTAAGGCCGGAGAAGAAAACAATGGAATAAAATTGGAAAAAATGAGTGGAAAAATAGAGTTAAAGAATGTTGATTTTTCGTATCCGAGTAGAGCAAAGACACTAATTTTGAACAAATTTTGCTTGGAAGTGAAGGCAGGAAAAAGTATTGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATTGCATTAATACAAAGATTCTATGATGTTGAAAGAGGATCAGTGAAAATTGATAATGTGGATTTAAGAGAATTAGATATTCATTGGTATAGACAACAAACTTCATTAGTAAGTCAAGAACCTGTGATTTATTCTGGTACCATACGTGATAATATTTTGTTTGGAAAACAAGATGCTAATGAAAATGAAGTTGTTGAGGCTGCTAGATCCGCAAATGCTCACGATTTCATTTCATCATTGAAAGATGGATATGAAACACAATGTGGAGAAAGAGGAGTTCAATTATCAGGTGGACAAAAGCAAAGAATAGCAATTGCAAGGGCCATAATTAGAAATCCAATCATACTTCTACTTGATGAGGCAACAAGTGCTTTGGATGTACAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGAAGAACAACCATTGTTGTGGCACATAGGCTTAATACAATCAAAGAACTTGATTCTATTGCTTATGTGTTAGAGGGTAAGATTGTGGAACAAGGAAGCTATTCCCAGCTTAAGCACAAGAGAGGTGCTTTTTTCAACCTTGCCAACCATCAAATCCAAACTTAG 3708 0.373 MSSEKEGEVRKSKEGGSISIILRYSDWIDVILMLMGALGAIGDGMSTNVLLLFASRIMNSLGYNNNSDTNSMNEVEKCSLYFVYLGLTTMVVAFLEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQETNTSEIINSISKDTNLIQEVLSEKVPLFLMQSSSFISGIAFATYFSWRLALVAFPTLILLIIPGMIYGKYLIYLSKSSMKEYGKANAIVQQALSSIKTVYSFTAEKRTMEKYSEILDRTSKLGVKQGIAKGVAVGSIGLSFAIWGFLAWYGSHLVMYKGESGGRIYAAGICFIMSGLSLGVVLPDLKYFTEVSIAASRIFAMLDRTPEIDGEDTTKGTTLQTINGNLNFEHVKFTYPSRQETIVLCDFNLQIEAGKTVALVGASGSGKSTVIALVQRFYDANEGVVRVDGFDIKSLQLKWLRSKMGLVSQEHAMFGTSIKENIMFGKNDATVDEIVAAATAANAHNFIRQLPDGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASLGRTTLVVAHKLSTIRNADLIAVVSNGCIIETGTHNELINTPNGHYAKLAKLQTQLSINDDQDQIQEQQSILLSAARTSAGRTSTAKSSPKSPLPNDVNPIAISKISHSSPSFSRLLFLNSPEWKQGLIGTLSAIAFGSIQPLYALTIGGMISAFFAKSHQEMKHRIMNYSLIFTSLSVASITLNLIQHYNFAYMGAKLTKRIRLRMLEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRVCLLVQTASSVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRMEARKKSWLAGIGMGSAQCVTFMCWALDFWYGGKLVQKREISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGEENNGIKLEKMSGKIELKNVDFSYPSRAKTLILNKFCLEVKAGKSIGLVGKSGCGKSTVIALIQRFYDVERGSVKIDNVDLRELDIHWYRQQTSLVSQEPVIYSGTIRDNILFGKQDANENEVVEAARSANAHDFISSLKDGYETQCGERGVQLSGGQKQRIAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVLEGKIVEQGSYSQLKHKRGAFFNLANHQIQT* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1072 1235 SUPERFAMILY ABC transporter transmembrane region 658 971 IPR036640 GO:0005524|GO:0016021
Psa1g1072 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Psa1g1072 1235 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 20 1232 IPR039421 -
Psa1g1072 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 660 976 - -
Psa1g1072 1235 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524
Psa1g1072 1235 Gene3D ABC transporter type 1, transmembrane domain 640 1004 IPR036640 GO:0005524|GO:0016021
Psa1g1072 1235 Gene3D ABC transporter type 1, transmembrane domain 21 612 IPR036640 GO:0005524|GO:0016021
Psa1g1072 1235 Pfam ABC transporter transmembrane region 35 289 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1072 1235 Pfam ABC transporter transmembrane region 672 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1072 1235 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 20 1232 - -
Psa1g1072 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1231 IPR003439 GO:0005524
Psa1g1072 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 596 IPR027417 -
Psa1g1072 1235 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Psa1g1072 1235 SMART AAA_5 1022 1214 IPR003593 -
Psa1g1072 1235 SMART AAA_5 385 577 IPR003593 -
Psa1g1072 1235 Gene3D - 1018 1235 IPR027417 -
Psa1g1072 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1232 IPR027417 -
Psa1g1072 1235 CDD ABC_MTABC3_MDL1_MDL2 360 596 - -
Psa1g1072 1235 SUPERFAMILY ABC transporter transmembrane region 21 341 IPR036640 GO:0005524|GO:0016021
Psa1g1072 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 330 - -
Psa1g1072 1235 Pfam ABC transporter 378 525 IPR003439 GO:0005524
Psa1g1072 1235 Pfam ABC transporter 1014 1162 IPR003439 GO:0005524
Psa1g1072 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1072 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1072 1235 Gene3D - 348 597 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1072 Psa-Chr1 74369294 74375112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1072 5 1225 Calmodulin-binding Proteins AT2G36910 41.481 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1072 K05658 - gmx:100801088 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1072 1 74369294 74375112 Psa1g1072 1 74369294 74375112 ECH