Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1070 ATGGAAGCAGTAGCGGCAGCCATTACAAAAAACAGCCACAGTTATGATTCATTCTGCCTGACTAATGCTAAAAATAATAATATGAAAGTGAATAGTGCAGATCCTTTGAATTGGGGTGTGGCCGCCGAGGCAATGAAAGGGAGCCACTTGGATGAAGTGAAACGTATGGTGGAGGAGTACCGGAAGCCGGTGGTTCGTCTTGGTGGCGAGACGCTCACGATATCTCAGGTTGCTGCCATTGCCGCACATGACCATGGTGTGAAAGTTGAGTTGTCCGAATCTGCTAGAGCTGGCGTAAAAGCGAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGCACAGACAGTTATGGTGTCACCACCGGTTTCGGCGCCACATCACATCGCCGTACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGGTTTTTGAATGCCGGAATATTTGGAATTGGAACTGAGTCAAACCACACACTGCCACACACTGCAACAAGAGCCGCCATGTTAGTGCGAATCAACACACTTCTCCAAGGCTATTCTGGTATTCGATTTGAAATCTTGGAAGCCATAACCAAGCTCATTAACAGCAACATCACCCCGTGTTTACCACTTCGAGGTACTATCACTGCTTCGGGTGATTTAGTCCCTCTTTCTTACATTGCTGGTTTACTAACAGGAAGACCGAATTCCAAAGCTCATGGACCTTCTGGAGAAATACTTAATGCCAAACAAGCTTTTCAATTGGCTGGAATCAATTCTGATTTCTTCGAGTTACAACCAAAAGAAGGACTTGCACTTGTTAACGGAACTGCTGTTGGTTCTGGTTTGGCTTCTATTGTTCTATTTGAATCTAACATCTTAGCTGTCTTGTCTGAAGTCCTATCTGCTATTTTCGCGGAAGTTATGCAAGGCAAACCCGAATTTACGGATCACTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAAGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTGCATACGTCAAAGCAGCTAAGAAGTTGCATGAGATGGATCCTTTGCAGAAACCAAAACAAGATAGATATGCACTTAGAACTTCGCCACAATGGCTTGGTCCTCTCATTGAAGTAATTCGATTCTCTACCAAATCTATTGAGAGGGAAATTAACTCTGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGTGGGAATTTTCAAGGAACACCTATTGGAGTATCCATGGATAATACACGCTTGGCTCTTGCATCAATTGGTAAGCTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAACGGTTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAAGGATCAGAAATTGCCATGGCTTCTTATTGTTCCGAGTTACAATACCTTGCAAATCCCGTCACGACTCATGTTCAAAGTGCCGAGCAACACAACCAAGACGTGAACTCCTTGGGTCTGATTTCCTCTAGGAAAACATATGAAGCCGTTGAGATCCTTCAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTAAGACATTTGGAAGAGAACTTGAAAAACTCAGTTAAGAACATCGTAGGCCAAGTTGCTAAGCGGACCCTTACAACTGGTGTGAATGGAGAACTCCATCCTTCAAGGTTTTGTGAAAAGGACTTGTTGAGAGTAGTTGATAGGGAGCACGTGTTTGCCTACATTGATGATCCTTGTAGTGCTGCATATCCATTGATGCAAAAACTAAGGCAAGTGTTGGTGGATCATGCATTAGTAAATGGAGAAAACGAGAAGATTTTGAACACGTCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAATCCTAGAGTTCCAAACAAGATCAATGGATGCAGGTCTTATCCACTTTACAAGTTTGTGAGAGAAGAGTTGGGGACTGGTTTGCTAACAGGAGAAAATGTGATTTCACCAGGGGAGGAGTGTGACAAACTATTCACAGCTATTTGCCAAGGAAAAATCATTGATCCCCTTCTTAAATGCTTGGGAGAATGGAACGGTGCTCCTCTTCCTATTTGTTAA 2178 0.4293 MEAVAAAITKNSHSYDSFCLTNAKNNNMKVNSADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGIGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKQAFQLAGINSDFFELQPKEGLALVNGTAVGSGLASIVLFESNILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAVEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNIVGQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSAAYPLMQKLRQVLVDHALVNGENEKILNTSIFQKIATFEDELKTLLPKEVESARAAYESGNPRVPNKINGCRSYPLYKFVREELGTGLLTGENVISPGEECDKLFTAICQGKIIDPLLKCLGEWNGAPLPIC* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1070 725 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 725 - -
Psa1g1070 725 Pfam Aromatic amino acid lyase 72 546 IPR001106 -
Psa1g1070 725 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 207 223 IPR022313 GO:0016841
Psa1g1070 725 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 34 714 IPR005922 GO:0005737|GO:0006559|GO:0016841
Psa1g1070 725 SUPERFAMILY L-aspartase-like 34 725 IPR008948 GO:0003824
Psa1g1070 725 Gene3D - 538 659 IPR023144 -
Psa1g1070 725 Gene3D Fumarase/aspartase (Central domain) 272 720 - -
Psa1g1070 725 PANTHER HISTIDINE AMMONIA-LYASE 25 725 IPR001106 -
Psa1g1070 725 Gene3D - 24 271 IPR024083 -
Psa1g1070 725 CDD PAL-HAL 70 535 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1070 Psa-Chr1 74221246 74224103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1070 18 725 Monolignol Biosynthesis Gene Families AT2G37040 82.062 0.0 1240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1070 K10775 - gmx:100811101 1274.23