Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1041 ATGGGTTGCATTTACTCAAGAGTTTGTATAGGTGACAATTGCAAGGGTTCTAGCATAAACGGCGACGCTATTTCAACTTCAAGACATGAGTTTCGTGAAGTTAATACCTTTTCACCATCTTTTTCGGTTGAAGGTGAAGTTAGAGATCAATTGAATCAATTAAGCTTAACTAGAGATTCAGAAGCTGGAATTAGAAGATTATCTAGGGTTTCATCACAGTTTTTACCTGCTGATGGGTCAAGAACAGTGAGAATTGGTTCTTATGACTATGAGTTACGGTATTCTTATCTTTCTCAACGTGGTTATTATCCTGATGCTCTTGATAAAGCGAATCAAGATAGTTTTTGTATTCATACACCTTTTGGAAATGATGTTAATGATCATTTTTTCGGTGTTTTTGACGGTCATGGTGAGTTTGGAGCAGAGTGTTCGCAGTTTGTCAAGCGTAAGCTTTGTGAGAATTTATTGAGGAATTCTAAGTTTAGTGTTGATGCCATTGAGGCTTGTCATTCGGCTTTTTTAGCAACGAATTCGCAGTTGCATAGTGATATTTTAGATGATAATATGAGTGGAACAACGGCGATAACAGTTTTGGTTAGAGGGAAAACGGTTTATGTAGCGAATTGCGGAGATTCGAGGGCGGTTATAGCTGAGAAGAGAGGGAAAGATGGTGGTGGGGATGGTAGTGTTGTGGCGGTTGATTTGTCGATTGATCAGACACCTTTTAGGGTTGATGAATTAGAAAGAGTGAAACTTTGTGGTGCTAGGGTTCTTACTTTGGATCAAATTGAAGGGTTAAAGAATCCTGACGTTCAATGTTGGGGTAGTGATGAAGAAGGCGATGATGGTGATCCTCCTAGGTTGTGGGTTCCGAATGGGATGTACCCTGGTACTGCTTTTACAAGGAGTATTGGTGATTCTATTGCGGAGAGTATTGGTGTTGTTGCGGTTCCTGAGATTGTTACTTTTGAACTCACACCTAATCATCCATTTTTTGTTATTGCTAGTGATGGAGTTTTTGAGTTTCTTTCTAGCCAGACTGTGGTTGATATGGTTGCAAAATTCAAAGATCCACGTGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTTTGGCTACAGTACGAGACGCGTACAGATGATATTACAGTAATCATTGTGCATATAAATGGCCTAAATGAACCTGCTGTTGCTCACTCGGCAAGTTCTCGCGATGTTTTACGAACTCCTGTCCCTCAGGTTGTAGAGGTGACAGGTTCAGAATCTCCTTCCACCTTTGGCTGGAATGCCAGGAACCATCGCGTAAGGCAAGAATTGTCAAGGGCACGCCTTCGAGCAATCGAAAATTCCCTTGAGAATGGACAAGGTTGGGTTCCTCCATCTTCAGCGCACAGAAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCATTGCACGATCATTTTCTCTTCAGAAAACTTACCGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTCGAAGTCGAACCTAAGGATATTATAGTCAAACAGGGTGGTGAAAGTGACTGTTTTTATGTTGTTGGAAGCGGAGAATTTGAGGTCTTGGCGACTCAGGAAGAAAAAGATGGGGAGGTACCTAGGGTTTTGCAGAGCTACACAGCCGAAAAACTATCGTGCTTCGGGGAACTTGCTCTTATGTACAACAAACCGCTCCAGGCTTCTGTGCGTGCCGTAACAAAGGGAACTCTTTGGGCTTTAAAGCGAGAAGACTTTCGAGGGATTTTAGTGTCGGAATTCTCTAACTTATCATCGTTGAAGTTACTTCGGTCTGTAGATCTCCTCTCAAGATTATCAATTTTACAACTTAGTCAGATTTCCGACTCCCTTACGGAAGTTTCCTTCTCAAGTGGACAGACAATAATCGATAAAAATGAAGTCCTTGCATTGTACATCATCCAAAAGGGACGAGTAAAAATAACTTTCGATGCCGCCTTCTTGACGAGTCCAAATACTAATAGTCTCAATAATGACATCCAAAATGAGGAGGAGGATGATGATAAACAGAGCGGAACAGAATTGTCAATAGAGAAGCCCGAGGGAAGCTATTTCGGTGAATGGTCCCTTCTGGATGAACACATTGGTTCCTTAACTGCTGTTGCTGTGGATGATGTTGTATGTGCTTTACTAACAAAGGAGAAATTTGAATCAGTTATTGGATCCTTACAAAAGATTTCTCAGGAGGATCACAAGTCGAGGAACAATTCCAAGGAATTGACTAAAAGCTTTGAATTCTCATCCCTCGATAAAGTCCAGCTCACAGATTTGGAGTGGAGAAAAACCTTATATTCTACTGATTGTTCTGAGATTGGACTCGCAAACTTAAGAGACTCAGAAAATGTACTTACTTTGAAGAAGTTTTCCAAGTCAAAAGTGAAAAGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAGAGATTTGATTAAGGGTATGAGCTCTTCAGCTTGTGTACCACAAGTTTTATGCACCTTTGCTGATCGCACATGTGCTGGAATACTGCTAAATACTCGTCTTGCCTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGCGAATCAGCAGCCCAATTTTGCGCGGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTGTTTCATCTGATGTTTTGATGTTGGATCAAACAGGACAGATACAGCTGGTAGACTTCAGATTTGGAAAGAAGCTATCTGATGAGAGAACATTCACAATTTGTGGGATGGCAGATTCGCTAGCTCCAGAGATTGTTTTGGGAAAAGGCCACAGTTTCCCCGCTGACTGGTGGGCGTTGGGAGTTTTAGTGTATTTTATGTTACGGGGCGAAATGCCGTTTGGATCATGGAGAGAAAACGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAACTAAATCTTCCAGACACTTTTAGCCCTGAAGCTGCTGATCTCATCTCCAAGTTACTTGAGGTGGAAGAAAGTACAAGACTTGGTAGCCAAGGTTCTGATTCTGTTAAGAGTCACTCTTGGTTTAATGATATCGACTGGGAAAGGATTCGAAACCACACTTTTCCAGTTCCTCCGGAAATTACTTCTCGTGTAACGCAATATTTGGAAGCTCGTTCGGAGGATTGTAGTGCTTCTATGGGGTCCCCATCACAGGAAGTAGAAGAACTCAATGAGCCAGAATGGCTTGAAGATTGGTAG 3252 0.4173 MGCIYSRVCIGDNCKGSSINGDAISTSRHEFREVNTFSPSFSVEGEVRDQLNQLSLTRDSEAGIRRLSRVSSQFLPADGSRTVRIGSYDYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGNDVNDHFFGVFDGHGEFGAECSQFVKRKLCENLLRNSKFSVDAIEACHSAFLATNSQLHSDILDDNMSGTTAITVLVRGKTVYVANCGDSRAVIAEKRGKDGGGDGSVVAVDLSIDQTPFRVDELERVKLCGARVLTLDQIEGLKNPDVQCWGSDEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAESIGVVAVPEIVTFELTPNHPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPAVAHSASSRDVLRTPVPQVVEVTGSESPSTFGWNARNHRVRQELSRARLRAIENSLENGQGWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPKDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQSYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILVSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLTEVSFSSGQTIIDKNEVLALYIIQKGRVKITFDAAFLTSPNTNSLNNDIQNEEEDDDKQSGTELSIEKPEGSYFGEWSLLDEHIGSLTAVAVDDVVCALLTKEKFESVIGSLQKISQEDHKSRNNSKELTKSFEFSSLDKVQLTDLEWRKTLYSTDCSEIGLANLRDSENVLTLKKFSKSKVKRLGKESQVLKERDLIKGMSSSACVPQVLCTFADRTCAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSSDVLMLDQTGQIQLVDFRFGKKLSDERTFTICGMADSLAPEIVLGKGHSFPADWWALGVLVYFMLRGEMPFGSWRENELDTVAKIAKRKLNLPDTFSPEAADLISKLLEVEESTRLGSQGSDSVKSHSWFNDIDWERIRNHTFPVPPEITSRVTQYLEARSEDCSASMGSPSQEVEELNEPEWLEDW* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1041 1083 ProSiteProfiles Protein kinase domain profile. 772 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1041 1083 SMART PP2C_4 94 388 IPR001932 -
Psa1g1041 1083 SUPERFAMILY Protein kinase-like (PK-like) 763 1053 IPR011009 -
Psa1g1041 1083 Gene3D - 89 391 IPR036457 -
Psa1g1041 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 610 752 IPR000595 -
Psa1g1041 1083 Gene3D Jelly Rolls 597 756 IPR014710 -
Psa1g1041 1083 CDD PP2Cc 109 390 IPR001932 -
Psa1g1041 1083 CDD CAP_ED 610 736 IPR000595 -
Psa1g1041 1083 Pfam Cyclic nucleotide-binding domain 629 735 IPR000595 -
Psa1g1041 1083 Pfam Cyclic nucleotide-binding domain 503 592 IPR000595 -
Psa1g1041 1083 SUPERFAMILY cAMP-binding domain-like 465 593 IPR018490 -
Psa1g1041 1083 ProSiteProfiles PPM-type phosphatase domain profile. 93 390 IPR001932 -
Psa1g1041 1083 MobiDBLite consensus disorder prediction 669 689 - -
Psa1g1041 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 484 592 IPR000595 -
Psa1g1041 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1044 - -
Psa1g1041 1083 SMART cnmp_10 484 607 IPR000595 -
Psa1g1041 1083 SMART cnmp_10 610 750 IPR000595 -
Psa1g1041 1083 Pfam Protein kinase domain 790 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1041 1083 Gene3D Jelly Rolls 453 592 IPR014710 -
Psa1g1041 1083 Gene3D Phosphorylase Kinase; domain 1 770 1047 - -
Psa1g1041 1083 PRINTS cAMP-dependent protein kinase signature 505 519 - -
Psa1g1041 1083 PRINTS cAMP-dependent protein kinase signature 520 534 - -
Psa1g1041 1083 PRINTS cAMP-dependent protein kinase signature 555 564 - -
Psa1g1041 1083 PRINTS cAMP-dependent protein kinase signature 731 743 - -
Psa1g1041 1083 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 42 1083 - -
Psa1g1041 1083 SUPERFAMILY PP2C-like 82 393 IPR036457 -
Psa1g1041 1083 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Psa1g1041 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 42 1083 - -
Psa1g1041 1083 MobiDBLite consensus disorder prediction 1058 1083 - -
Psa1g1041 1083 CDD CAP_ED 484 592 IPR000595 -
Psa1g1041 1083 Pfam Protein phosphatase 2C 120 369 IPR001932 -
Psa1g1041 1083 SUPERFAMILY cAMP-binding domain-like 603 741 IPR018490 -
Psa1g1041 1083 SMART serkin_6 780 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1041 Psa-Chr1 71795169 71801879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1041 1 1083 PP2C-type Phosphatase Gene Family AT2G20050 66.576 0.0 1454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Psa1g1041 PP2C 5.1e-34 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1041 - - gmx:100799821 1766.51