Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1040 ATGAATCATCTTGGTATTACCCTATTGACCCTCTCAATCTTATTCATCAATCATGTTAGAGCGCAAATATCAAGTTCATCTTCACAAGATGCTGTTTCAAATTTCCAACCAAGTCTTGTTGTTGTCATATCAATCCTAGGTCTTATGTTTGCATTAACATTCATTCTTCTCATTTTTGCCAAAGTATGTCATCGTAGACAATTACTTCCTCTTGGTGATGATCCAAATAATCAATTATCAACATTCATGAGATCAAGGTCAAGATTTTCAGGTATTGACAAAACAGCTATAGAGTCACTTCCTTTTTTTAGATTCTCTTCTCTCAAAGGCTCAAAACAAGGGTTAGAATGTTCAATATGTTTGTCAAAATTTGAAGATATAGAGATTTTAAGATTATTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACATTCAAGTTGTCCTATTTGTAGACATAAAGTCAACATTGAAGATGAAACAACCTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGATGAATCAAACATAGAGATCTTTGTCCAAAGAGAAGAAGAAAAAGAAAGTCAACATGGTTCATCATCAAGATTTAGTATTGGAAGTAGCTTTAGAAAAATTGGGAAAAGTAGTATTAAGGATGAAGAATCGCTCATACAAAAAGAATGTGATCACACGTATCAGCATCGTGTTGATGACTCCGGTAACACTTTCAATCAGAAGTGTCGGTGTTACAGAGATTTTCACAAACACAATCATCAGATTACTATATCTGATGTTGTGTTTAAGCATAGATGGAGTAATGTTAGTTCTTCGGATCTTATGTTTTTGAATTCGGAGATGATTAATGCTACATCAAGTAATAGATTCAACAACATGGAATCGGATTTTCATGATGGAGAAAAATATGTGAAACATGATGATGGTGAGAAAAGATCAGTTTCAGAAATCGCTAGTGTTTCTAGATTTAGAGAATTTGATATGAAGAAAAGGGTGTTTGGAGATTCTTCATTGGTTGAAAGTGATGTTAAAGAGGAGAGAATGAGAAAGCTTTGGTTTCCAATTGCAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAAAAGGTCTCAACAAAAGTCATTTGTAGATGTATAG 1161 0.329 MNHLGITLLTLSILFINHVRAQISSSSSQDAVSNFQPSLVVVISILGLMFALTFILLIFAKVCHRRQLLPLGDDPNNQLSTFMRSRSRFSGIDKTAIESLPFFRFSSLKGSKQGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDETTFAYSNSLRMLVSDESNIEIFVQREEEKESQHGSSSRFSIGSSFRKIGKSSIKDEESLIQKECDHTYQHRVDDSGNTFNQKCRCYRDFHKHNHQITISDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMESDFHDGEKYVKHDDGEKRSVSEIASVSRFREFDMKKRVFGDSSLVESDVKEERMRKLWFPIARRTAEWFVNREKRSQQKSFVDV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1040 386 SMART ring_2 117 158 IPR001841 -
Psa1g1040 386 SUPERFAMILY RING/U-box 97 165 - -
Psa1g1040 386 CDD RING-H2_PA-TM-RING 116 159 - -
Psa1g1040 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 168 IPR013083 -
Psa1g1040 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 304 - -
Psa1g1040 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 314 382 - -
Psa1g1040 386 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Psa1g1040 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 314 382 - -
Psa1g1040 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 304 - -
Psa1g1040 386 Pfam Ring finger domain 116 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1040 Psa-Chr1 71762176 71763766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1040 17 376 C3H Transcription Factor Family AT2G20030 45.619 5.23e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1040 K10664 - gmx:100803207 433.335