Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1036 ATGGATCGAATCATCGGCGAGAAGTTCAAGCTAGGTCGAAAGATCGGAAGCGGATCCTTCGGTGAAATCTATCTCGCTACTCATATTGATACGTTCGAGATCGTTGCCGTCAAGATCGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCCAAGCTCTATAATATTCTTCAAGGAGGAAGTGGTATCCCAAGCATTAGATGGAGTGGTGTAGACGGAGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTAGAGGATCTTTTTGTTTACTGTGGGAGGAAGTTCTCTCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTACGTGCATTCTAAAGGATTCCTACACAGGGATATTAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTATGTAATTGATTTTGGGCTTGCAAAACGATATCGGGACTCTGCAACCAATCGCCACATCCCCTACAGGGAGAACAAAAACTTAACAGGTACTGCACGGTATGCAAGCTGCAATACTCATCTTGGGATTGAGCAAAGCCGGCGGGATGATTTGGAGTCACTGGGGTATGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTTAAGGCTGCGACGAAGAAGCAAAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTATTGCCATTCTTTGACTTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGAGAATTATTTGCTCGTGAAGGTTACAAATTTGATTATGTGTTTGATTGGACAATTTTAAAGTACCAGCAGTCTCAAAAGAGTAGAGTCCAGCCTCACATATCCCCGGTTCCTGTAGTGAGTAACAACCGGGCAATGCCCATGGATGTTGATAACCACCAAGGGGATGTCTCAGCCGAGCAAATTAAATCAGACAATGCTACTACTTCTGGTGTTAAGTTTCAATTTAAATCATCCGGTGGTAAAAATATAGCTTCTGAAAATCCTCTTGGCAAAAATATTTTTGGTGAAGCACCCATCCCTTCTACTTCATACTCTTTTGAGGCATCAAGAAGAAACTCCTTGAAGCCTTCCCCGTCCGCTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATGAATGTTCTGCACATAAATTCTGCTAAGTGA 1275 0.4251 MDRIIGEKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSATNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRVQPHISPVPVVSNNRAMPMDVDNHQGDVSAEQIKSDNATTSGVKFQFKSSGGKNIASENPLGKNIFGEAPIPSTSYSFEASRRNSLKPSPSAEAANHRHGQGSSKIGPSSSRMNVLHINSAK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1036 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa1g1036 424 Gene3D Transferase(Phosphotransferase) domain 1 1 341 - -
Psa1g1036 424 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1036 424 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 405 - -
Psa1g1036 424 PANTHER CASEIN KINASE-RELATED 1 405 - -
Psa1g1036 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1036 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Psa1g1036 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Psa1g1036 424 MobiDBLite consensus disorder prediction 379 424 - -
Psa1g1036 424 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1036 424 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1036 Psa-Chr1 71610804 71616371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1036 8 213 MAP Kinase Kinase Kinase AT1G54960 27.523 6.49e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa1g1036 Pkinase 9.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1036 K08960 - gmx:100805890 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1036 1 71610804 71616371 Psa1g1036 1 71610804 71616371 ECH