Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1034 ATGGTTGATGATTCACCTTCTTCACCTTCACATTCATCACCACCACAGTCATTGAGTTGTTCAAGTGATGAAGAAAAGAGAGGAAAGAAAAGAGAAAGAGATAATAACAAAAACACAAACACAAACACTAATCACCCAGTTTACAGAGGAGTTAGAATGCGGACGTGGGGAAAATGGGTTTCCGAAATAAGAGAGCCAAAGAAGAAAAACCGAATCTGGCTTGGAACTTTCGAAACAGCCGAAATGGCGGCGCGTGCACACGACGCAGCAGCACTTACCTTAAAAGGCTCATCCGCATTCCTTAACTTCCCCGAACTCTCAACTTCACTTCCTAAACCAGCTTCCAACTCACCAAAAGATGTTCAAGCCGCCGCCGCCAAAGCCGCTCTTATGGTCCCTCCGCCTCTCTCACCGGAACCTTCTTCTTCCTCCTCTTCCTCCTCCACATCCTCCACCTCCACCTCCTCCTCGACAATAGAAGATCTGGTAGAGATTGTTGAACTACCGCGACTCGGAACATGTTTTGAGTCACTCGACCCGAGTAACGAGTTAGTGTTTTTTGACTCAGTTGATTATTCAGAATCATGGTATCATGGCATTTATGATCATGAAGAAGAGAATGGTTATGGTAGTGGATGCAACTTCAACATGATATCAATGCATGACCCAGAAAACACGGTTCTTTCATTGTGGTCTTGA 699 0.4506 MVDDSPSSPSHSSPPQSLSCSSDEEKRGKKRERDNNKNTNTNTNHPVYRGVRMRTWGKWVSEIREPKKKNRIWLGTFETAEMAARAHDAAALTLKGSSAFLNFPELSTSLPKPASNSPKDVQAAAAKAALMVPPPLSPEPSSSSSSSSTSSTSTSSSTIEDLVEIVELPRLGTCFESLDPSNELVFFDSVDYSESWYHGIYDHEEENGYGSGCNFNMISMHDPENTVLSLWS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1034 232 MobiDBLite consensus disorder prediction 135 158 - -
Psa1g1034 232 MobiDBLite consensus disorder prediction 141 158 - -
Psa1g1034 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 207 - -
Psa1g1034 232 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Psa1g1034 232 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Psa1g1034 232 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Psa1g1034 232 MobiDBLite consensus disorder prediction 22 38 - -
Psa1g1034 232 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Psa1g1034 232 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Psa1g1034 232 MobiDBLite consensus disorder prediction 1 21 - -
Psa1g1034 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 207 - -
Psa1g1034 232 MobiDBLite consensus disorder prediction 1 49 - -
Psa1g1034 232 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Psa1g1034 232 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Psa1g1034 232 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1034 Psa-Chr1 71255914 71257550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1034 22 217 AP2-EREBP Transcription Factor Family AT5G11590 50.971 5.21e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g1034 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1034 K09286 - gmx:100804801 202.216