Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1023 ATGTCGTGCATTTTGAAGGGAAGTCACGATGTAACCTTGGATGGAAGCTTCTGTTGTGTTTCCTGTGAAAAAATTAATGAATTAATGAGGACAGGAAGAAAGCAATTATTGGTTGCCAGAGAAGCAAGAAGAGTGGATATACTCTCTGTGAGAATTTCCTTAGCCCACAGAATTCTCACAGGAACCAAAGTATACATGGAAATGCATAAGATCGTAGAAACCGCTCTCGAAATATTGGAGATTGAAGCGGGACCTCTGGATCACGTATATGCTAGGCTGATGCGTGGAATTATGAGCAGGCTCTCATGCGGTGCTGAGGTTCAGAAGTTGTGCTCTACTGCAGTTGAATGTTTTGATTTAAAGTTGTCTGAACTCTTTTCTAGTTGTGAAGAAAAGAAAGAAGCACCAACATGTTCCTTACATTTCGAAGAGTGTCTTCCCACCTCAGTGGTCATTGTGCTTGAATACAAAGACAAACTCTTAAAGATAAGCACCAACATGTTCCTTACATTTCGAAGAGTGTCTTCCCACCTCAGTGGTCATTGTGCTTGA 552 0.413 MSCILKGSHDVTLDGSFCCVSCEKINELMRTGRKQLLVAREARRVDILSVRISLAHRILTGTKVYMEMHKIVETALEILEIEAGPLDHVYARLMRGIMSRLSCGAEVQKLCSTAVECFDLKLSELFSSCEEKKEAPTCSLHFEECLPTSVVIVLEYKDKLLKISTNMFLTFRRVSSHLSGHCA* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1023 183 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 170 IPR044514 GO:0010048|GO:0040029
Psa1g1023 183 Pfam PHD - plant homeodomain finger protein 4 57 IPR032881 -
Psa1g1023 183 PANTHER OS08G0220600 PROTEIN 2 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1023 Psa-Chr1 70647905 70648615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1023 13 154 PHD Gene Family AT3G24440 44.366 1.01e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1023 - - gmx:100785502 248.44