Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1018 ATGAGTTCGTTCTCCATTACAAGGAAAAAAACGCCATTTCAGAAGCATAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCTGAAGACGAGACTGCCCGTTTGTATGCCGAATTTGTAGAGTCATTTCAAGGGGATAACGCTCCCGGGTCAAAGACCTTTGTTCGAGGAGGAACAATAAATCCCAATGATAAATTGAAAGACGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCGTCTTTTATACCCCCACCATTGGCATCCAAGGGTAAAGAACCTGAAAGAAAAAAAGAGGAAGAAAAGCCTAAGGAAAAAGAGAAAGGAAAGTCAAGGAATATTGATCATTTTATGGAGGAGCTAAAGCAAGAGCAAGAGATGAGGGAAAGACGAAATCAAGATCGTGAACAATGGCGTGATGGGCGTCTTGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTGCCTGACGATTTTGATCCAAGTGGAAAACTTCCAGGATCTTTTGATGATGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTTTCACCCCAGGTTGATGAAAACTTTCTTCTGCGCACCTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAAGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGGGTTGATGGACAGGCTGCTAAAGACGAAATGCAAGGAGTTGTGGTTTATGAGTACGAATTGAAAATTGGATGGGGAAAGTCCGTTGCCCTCCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAAGAGGGTAACACTGTTATCTTGTCGGGCCCATCAGGTCCACCAGTCACATCAGTGCCTAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCCCTTTTCAGTTTCTTGTTTGTTCTTGGCTCGAAGGAGCATACCTATTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCTGCATTACCAATAACCAAAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGGAGCAGGCGTGTAGAACCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGACATGCTACGTGCTTTAACATTAGAGAGAAGTCAGATAAAGGGGACTATGGGGTTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTTTTGACAGAATCCTTGACACTCAAAGAAACCCCTATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCATATCGTACCAAGTTTGAAGCTACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGGAGCATAATGGGGCGTATTACTGCCGAAGCCCTTAAGGAACGAGTACTGAAGGTTTTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTCCTCAGACCTGGGAACTCTGGTGTAATACCATTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGATCACTTCTGAAGATGCTGTTGTTGGTGACAAGACCGACCAAGATGCTGCATTGTCAATGGGTCGAGGAGCTGCAATGAAAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTACGAACTAGATGATGAATTGAAATATCCCCTCAACCAAGCAAGTTCAGGGAAATATTCAAGTAGTCGGCGAGAAACAAGTGCAGATCCTGAACCAATGGGAATATCTGGATTGAACCACTATGGGGAGGAAGATTCGCAGTTGCAAGGCAAAGGTTCTGCACCTTTAGCGCCAACACTTTCTATTCCACAGCCTGAACTTAAAGCCTTCGCAAAAAGAGAGAAGAATGATCTGATTTTGCCAGCTTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAGGGAAAGGTGGAAAAAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGCCATCTTAAAGCTGATGAATCAGAGGCTGTTGCTGATTCAAGTTTTCCAGCTCATGCTTACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTAGAGGAAATTGAGAAAAAAGTTCTGATGCATCGAAAAAGGTTGCAAGTGGAGTACGGTATATCAGATTCTAGTGAGGATGGTCAAGGCAGTAGTAGAACGTCTTCAGAGAGGAGGGATAGGCACGATGTCTCAAGAAAGCGACACCGCAGCCATAGTCCAAGTGGTAGTCCACGACAGAAACCATCAAGCAAAGACAGAGATAGAGAAAGAGATTTAGAACGGGAACGAGAAAGAGAAAGAAAAAGGGATAAAAATTATGATTTTGACAGTGATAGAGGAAGAGACCGGCTCAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATTATGATAAGGATAGAGGCAGGGACAGGGACAGAGACAGAGACAGGAGAAGACGTGCCAAATAA 2934 0.4397 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLASKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRLGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRVDGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPITKSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGTMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDAVVGDKTDQDAALSMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYPLNQASSGKYSSSRRETSADPEPMGISGLNHYGEEDSQLQGKGSAPLAPTLSIPQPELKAFAKREKNDLILPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVGDGHLKADESEAVADSSFPAHAYSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQVEYGISDSSEDGQGSSRTSSERRDRHDVSRKRHRSHSPSGSPRQKPSSKDRDRERDLERERERERKRDKNYDFDSDRGRDRLREKSGSRERDDYDKDRGRDRDRDRDRRRRAK* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1018 977 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Psa1g1018 977 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Psa1g1018 977 MobiDBLite consensus disorder prediction 760 776 - -
Psa1g1018 977 MobiDBLite consensus disorder prediction 417 442 - -
Psa1g1018 977 MobiDBLite consensus disorder prediction 866 977 - -
Psa1g1018 977 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Psa1g1018 977 MobiDBLite consensus disorder prediction 61 80 - -
Psa1g1018 977 Coils Coil 820 840 - -
Psa1g1018 977 PANTHER - 5 972 - -
Psa1g1018 977 Gene3D - 443 589 IPR008942 -
Psa1g1018 977 Pfam CID domain 450 578 IPR006569 -
Psa1g1018 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Psa1g1018 977 MobiDBLite consensus disorder prediction 760 824 - -
Psa1g1018 977 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Psa1g1018 977 MobiDBLite consensus disorder prediction 99 160 - -
Psa1g1018 977 MobiDBLite consensus disorder prediction 1 160 - -
Psa1g1018 977 SMART cwf21_2 819 868 IPR013170 -
Psa1g1018 977 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Psa1g1018 977 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Psa1g1018 977 MobiDBLite consensus disorder prediction 909 977 - -
Psa1g1018 977 Coils Coil 17 37 - -
Psa1g1018 977 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Psa1g1018 977 SUPERFAMILY Surp module (SWAP domain) 309 390 IPR035967 GO:0003723|GO:0006396
Psa1g1018 977 PANTHER RNA PROCESSING PROTEIN LD23810P 5 972 - -
Psa1g1018 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Psa1g1018 977 SMART rrm1_1 187 263 IPR000504 GO:0003723
Psa1g1018 977 Gene3D - 819 870 - -
Psa1g1018 977 MobiDBLite consensus disorder prediction 11 35 - -
Psa1g1018 977 MobiDBLite consensus disorder prediction 416 442 - -
Psa1g1018 977 CDD RRM_SR140 185 268 IPR035009 -
Psa1g1018 977 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Psa1g1018 977 SMART 558neu5 450 585 IPR006569 -
Psa1g1018 977 Gene3D - 97 269 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1018 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.79e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1018 K12842 - gmx:100776093 1630.54