Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0997 ATGGAAGAAGGTGAAGGAGGAGATTGTGGTCGGAAGAATGCTCCGTTGGTTTCGGAATTTGTTGTGGCTGCTTCACCGGCGGCGGCTGCAACGGCGTGGTTGGATGCTCCGGCAAAGAAGCTAGCGAGACAGCTAGATTTTAATGCTACGATGGAACAGTCGAAACCTCAGCTGCAGACAGCCACTGTGTCGGTGCAGAAACCGGCGGGTGGTTTGCCTTTGCCGCCGATGGGACTTCATCACTCTTCTGTGAGGGTTGGGAAACCAGAATCTCCCAAACCAAGATCAAGACCTAACTTTGAAATGAAAGAAGGTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACACTCTAAATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATACTGTGACGGTTGCAACTGTGCAAATTGTTTCAACAATGTTGATAATGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCGAGCAGCCCTCAGGGAGCACGCGACAGCAGGGAGGAGGCTGGAGAAGGTGTAATATTAGTAAAACATAACAAGGGGTGCCATTGTAAAAAATCCGGCTGCCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGTTCTGAGAACTGTAAATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTGTCATGGAGATCAAAATAACAACACTTTTATTCAGCAAGCGGCAAATGCTGCTATAACTGGAGCTATTGGTTCCTACGGCTATTCATCTCCTCCAGTATCAAAGAAACGAAAAGGTCAGGAACTCTTCTTATGGCCTACAGCCAAGGATCCATCAATTGGCAAACCGGGACAACAGGTAAACCATGTAAAAAATTCAGCACCCTCGTCATCATTATCACCCGCCTCAAGTGGTCGTGTTGCAAATGCAACATTAGGTCAGAGTCCATCAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTTTGGTGCTACTATCTGGACAAACTGCAAAAACACTTGCAGACCAGAAAAATTTAGTGGAAAAGCGTACAGAAGATGAGACACAAACATGCCTTGCTTCTTCAACTCAAGAGCAATTATTACCAAGTAAAAAAGAAGTTGATGCTTTGAAAACTATGGAAGATGATTGTTCGAGTGCAAATCAAACAGATAAAATCAGCCCAGGTAATTCCTGTTCAGATGGTGCTGACGTCTCAAAAGGGAGACCAATGTCTCCTGGGACTTTAGCCTTGATGTGCGACGAGCAAGATACAATGTTCATGCCAACTGCCTCTCCCATTGGGCCAATGACGCAAGCTTGCAACACATCTTCGCGGTTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCCGAGCAAGAAAGAGTTGTATTAACACAATTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAATGTTCTTCATTGGCTAGAAGTGAATTAGAGGGTCAAAAGGATCCAATCAACAATGGAATTGGAAACACCAGTACTGAGATAGTACATTTACAAGAAGCCACTAGCAATGGTGATGCCAAACCTGTAGTTCCACCTATGGCCACAACTTCAACCCCCGTTGTGGTCCCTGGTGATACTATAGCTGAAAATGGTGAAACTAAGCTGAATATGGAAAAAGAGGTATGA 1755 0.4382 MEEGEGGDCGRKNAPLVSEFVVAASPAAAATAWLDAPAKKLARQLDFNATMEQSKPQLQTATVSVQKPAGGLPLPPMGLHHSSVRVGKPESPKPRSRPNFEMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCANCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREEAGEGVILVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALCHGDQNNNTFIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTAKDPSIGKPGQQVNHVKNSAPSSSLSPASSGRVANATLGQSPSKLKYRSLLADIVQPHHLKELCSVLVLLSGQTAKTLADQKNLVEKRTEDETQTCLASSTQEQLLPSKKEVDALKTMEDDCSSANQTDKISPGNSCSDGADVSKGRPMSPGTLALMCDEQDTMFMPTASPIGPMTQACNTSSRFPSGQGVTEVYAEQERVVLTQFRDFLNRVITMGEINETKCSSLARSELEGQKDPINNGIGNTSTEIVHLQEATSNGDAKPVVPPMATTSTPVVVPGDTIAENGETKLNMEKEV* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0997 584 MobiDBLite consensus disorder prediction 411 435 - -
Psa1g0997 584 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 60 558 - -
Psa1g0997 584 MobiDBLite consensus disorder prediction 298 320 - -
Psa1g0997 584 ProSiteProfiles CRC domain profile. 109 233 IPR005172 -
Psa1g0997 584 MobiDBLite consensus disorder prediction 83 104 - -
Psa1g0997 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 196 230 IPR005172 -
Psa1g0997 584 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 110 145 IPR005172 -
Psa1g0997 584 PANTHER TESMIN/TSO1-RELATED 60 558 IPR028307 -
Psa1g0997 584 MobiDBLite consensus disorder prediction 411 426 - -
Psa1g0997 584 MobiDBLite consensus disorder prediction 86 104 - -
Psa1g0997 584 SMART CXC_2 193 234 IPR033467 -
Psa1g0997 584 SMART CXC_2 108 148 IPR033467 -
Psa1g0997 584 MobiDBLite consensus disorder prediction 294 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0997 Psa-Chr1 68368059 68374757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0997 37 520 CPP Transcription Factor Family AT4G29000 54.598 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Psa1g0997 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0997 - - gmx:100777698 844.728