Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0993 ATGTCGACGGCTCCGGCACCTTCTTCCCCGCCGTCGGCAAACGCCACTGCACCCCCACCGTCGACCCCTGCCGCACCTCCTCCGGCCACACCTTCTTCACCACCACCTTCCAATCCACCTCCGGCAACTCCTTCATCACCTCCTCCGGCGACACCCTCGGCACCTCCGCCGGCGACCCCTTCATCACCACCTCCTCCGAAGACTCCCTCAGCGCCTCCTCCAGCAACACCTTCAACTCCTCAGCCAACACCAGCAGCACCGTCGACTTCTCCGCCAGCTCCTACCACGCCGTCGCCTCCTGACCTCGGAAACACTCCTCCGAGTCCACCTTCCCGAGGCTCGCCGCCCTCTCCGAAAGGCTCTGATCAAAGCCCTTCACCGCCTACTCCCAAAACTCCGCCGTCGCCTCCTTCATCGTCGTCAAGTATTAGTACGGGTGTAGTCGTGGGAATCGCCGTTGGAGCGGTGGCGATTCTTGTGGTGTTTAGTATTCTTTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGCGATGAAGAATACTATGGTCAGCAGCATCAGCAACCACCACCTCAGGCACCCAAATTTGATCCTTATGGTGGTCCTCCAAATCAGTGGCAACATAATTCTCACCCTCCTTCAGATCATGTAGCCTCAATGAAGCCACCACAACCTCCGGCTCCAATTCCATCACGACCGCCGTCTCATGTTGCTCCGCCACCACCTCCTCTCATGAGCAGCAGTGGTGGTACCGGCTCAAACTATTCAGGCGGCGAACTACTTCCACCTCCTTCTCCAGGCCTTGCATTTAGCACTGCGAAGAGTACGTTTACATACGAGGAGTTGGCGCGCGCAACGGATGGCTTCTCTGATGCTAACCTCCTTGGACAAGGTGGATTTGGATATGTTCATAGAGGTATTCTCCCTAATGGTAAAGAGGTTGCTGTTAAGCAGCTGAAAGCTGGAAGTGGACAAGGAGAACGTGAATTTCAAGCTGAAGTAGAGATTATTAGCCGTGTTCATCATAAACATCTTGTTTCTCTTGTTGGATACTGCAGCACCGGGTTTCAGAGGCTACTTGTTTATGAGTTTGTTCCCAACAATACATTGGAATTTCATTTACATGGAAATGGACGACCAACGATGGATTNTACTGCACTCCATTCCTTTTGA 1170 0.535 MSTAPAPSSPPSANATAPPPSTPAAPPPATPSSPPPSNPPPATPSSPPPATPSAPPPATPSSPPPPKTPSAPPPATPSTPQPTPAAPSTSPPAPTTPSPPDLGNTPPSPPSRGSPPSPKGSDQSPSPPTPKTPPSPPSSSSSISTGVVVGIAVGAVAILVVFSILCICCRKKKRRRDEEYYGQQHQQPPPQAPKFDPYGGPPNQWQHNSHPPSDHVASMKPPQPPAPIPSRPPSHVAPPPPPLMSSSGGTGSNYSGGELLPPPSPGLAFSTAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGNGRPTMDXTALHSF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0993 389 SUPERFAMILY Protein kinase-like (PK-like) 263 379 IPR011009 -
Psa1g0993 389 PRINTS Proline rich extensin signature 11 27 - -
Psa1g0993 389 PRINTS Proline rich extensin signature 37 49 - -
Psa1g0993 389 PRINTS Proline rich extensin signature 53 74 - -
Psa1g0993 389 MobiDBLite consensus disorder prediction 11 137 - -
Psa1g0993 389 MobiDBLite consensus disorder prediction 217 245 - -
Psa1g0993 389 ProSiteProfiles Protein kinase domain profile. 288 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0993 389 MobiDBLite consensus disorder prediction 179 266 - -
Psa1g0993 389 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 40 383 - -
Psa1g0993 389 Gene3D Phosphorylase Kinase; domain 1 264 363 - -
Psa1g0993 389 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 40 383 - -
Psa1g0993 389 MobiDBLite consensus disorder prediction 1 145 - -
Psa1g0993 389 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Psa1g0993 389 Pfam Protein tyrosine and serine/threonine kinase 293 386 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0993 Psa-Chr1 68241212 68243143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0993 148 382 Trihelix Transcription Factor Family AT1G23540 42.857 3.63e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa1g0993 PK_Tyr_Ser-Thr 3.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0993 - - gmx:100781944 315.464