Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0988 ATGGGGATGGAGCAGAACAACATGATCGCACCGTTCATTATGAAGACATACCACATGGTTAACGAACCAAACACCGATAACCTTATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTCGACCCCCTCGAATTCTCTCACTCCCTTCTCCCTCTTTTCTTCAAACACAACAACTTCTCTAGTTTCGTTCGTCAACTCAACACCTACGGTTTCAGAAAAGTTGACCCGGATCGTTGGGAATTTGCGAATGAGTGGTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAAAAGCACGTTGGTGGAGTTGGAAATGGAAGGAATAATAATAATAATAATAATTGTTATTTTAATGAGGTGAAGTTTGAGGATTTTGAAGAAGATGAAGCTATGGTAACAGAAATAATGAAGCTAAAAGAAGAACAAAGAAATTTAGATCAAGAGCTTCAAGGGATGAACAAAAGATTAGAAACGACAGAGAAACGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATCCTGTCTAGAATACTCAACCAGAGAGAGAAGCAGATAGTTCTTGATAAGAAAAAAAGACGGATGATATCTCCGGTGATGACGGTGCCGGTGGCGGATACCTCGACTTCCTCAGACTCATCCGGCATGGCGGTGGGGAATTCTATGAAGACAGAGTTTGAGGAAGACGAGGTAACTGTTGCTAATAATATGATGTCTTCTTCGCCGGAGACAGGTTTTGAAATTGATTATTTCCACCGTGCGCCGCCGCGGGAGGTGACGCCGGTAGGAGGTTGGTGGGGACAGACGGAGATTGGACAAATGGGGTATGGGTATGATTGCAAAGTTTCTCCGACGACGTTGACGGCAGTGACTCCGGCTGCACCGTTTATGAGGGGTGAGAATAGTGGCGATGGTAAAATGGGGGGTGTGGAAGTTTTCAGTGAAATGGCGGCAGAGAATAGTTCGTTGCCACCTTATCCTTTTTCTTTGTTGGATGGTAGCTTTTAG 1035 0.4377 MGMEQNNMIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLEFSHSLLPLFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRKKHVGGVGNGRNNNNNNNCYFNEVKFEDFEEDEAMVTEIMKLKEEQRNLDQELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNQREKQIVLDKKKRRMISPVMTVPVADTSTSSDSSGMAVGNSMKTEFEEDEVTVANNMMSSSPETGFEIDYFHRAPPREVTPVGGWWGQTEIGQMGYGYDCKVSPTTLTAVTPAAPFMRGENSGDGKMGGVEVFSEMAAENSSLPPYPFSLLDGSF* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0988 344 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Psa1g0988 344 Coils Coil 139 166 - -
Psa1g0988 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 338 IPR027725 -
Psa1g0988 344 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g0988 344 Gene3D - 4 102 IPR036388 -
Psa1g0988 344 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g0988 344 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g0988 344 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g0988 344 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 10 338 - -
Psa1g0988 344 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa1g0988 344 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0988 Psa-Chr1 67870300 67872090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0988 8 204 HSF AT3G24520 61.194 1.14e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa1g0988 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0988 K09419 - gmx:100794896 372.089