LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g0966	ATGCCGCGATCAAGTTCGGGAGTTCATCACCAGCGTCAAAGCTCTGATAACTTCATCCTTGATGCAAATTATCAGGGAAGATGGTTTCATCCTTCAGCGTTTGCACATGAATTTGGAACTCGATCTTCGAGTTTGAGGAAGAGCGAGGATGATGGCGTGTTCATGAGTGGCTTGCTTGATTTGCATTCCTTTGATACTGAGCTTTTACCCGAGGGACAATATTTTGATGACTCTGAGCCGATTTTCCCCGGAAACAAACTTGCACCAAGATCTCGGGGCTTGACTGAGGGCAACATTCTTAGAAGTTTCTCAGCTGATAAAGAGAGAGCAAACAATGTTGCTAAGATCAAAGTTGCAGTCAGGAAGAGACCACTGAATAAGAAGGAAATAGCAAAGAAAGAAGAAGATATCATTACAATAAATTCAAATTCTCTCACAGTACACGAAAGAAAACTCAAGGTAGACTTGACAGAATACGTTGAGAAACACGGGTTCTTTTTTGATGCTGTGCTGGATGAAGATGTTTCAAATGATGAAGTGTATGCTGAGACTGTAGAGCCCATAGTTCCATTGATATTCCAACGAACAAAAGCAACTTGCTTTGCTTATGGCCAAACTGGGAGTGGGAAGACGTACACTATGCAACCATTGCCTCTCAAAGCATCCCAAGATATTTTAAGATTAATGCACCACACGTACCGGAGCCAAGGTTTCCAATTATACTTTAGTTTTTTCGAAATATATGGGGGGAAACTGTTTGATCTCCTCAATGATAGAAAAAAACTTTGCATGAGGGAGGATGGTAAGCAGCAGGTTTGCATTGTTGGCTTGCAGGAATACAGAGTATTTGAAGTTGAAACAATCAAGCAATTTATTGAGAAAGGAAATGCTTCAAGAAGTACTGGTACAACCGGTGCAAATGAGGAATCATCTCGATCGCATGCTATACTTCAACTTGTTATCAAGAGATCAGCTGATGGGTCTGAATCAAAGCCCGCTCGAGTCATAGGCAAACTATCTTTCATAGATCTGGCTGGAAGTGAACGCGGTGCAGATACCACGGATAATGATAAACAAACTAGGATTGAAGGGGCTGAAATTAATAAAAGCTTACTTGCACTGAAAGAATGCATTAGAGCCCTAGACAGTGACCAGGGGCATATCCCTTTCAGAGGAAGTAAATTGACTGAAGTTCTACGAGACTCTTTTGTTGGTGATTCAAGGACTGTAATGATATCTTGCATTTCTCCAAGCTCAGGTTCATGTGAGCATACTCTCAACACATTAAGATATGCTGACAGGGTAAAGAGCCTGTCAAAGGGGAACAGCTCCAGAAGGGACTCCCTTTCTTTATCCAACCTTAGAGACTCAACTGTATTGCCGATTTTACCTCATGATGATTCCTATGAAGATGAAATAACGTATGTTTCCGGTGAGAGGAATCAATTTGGTTGGTCCAAACAGCCTCAAAGAGAACCCTCGCCTCCAAATAAGGTGGACCGTGTTGCAAGTGGTAGGATAGAGGGAAATTTGGCACCATCTATGTACTCCGACCGACAAGGAGGTATTCAAAATGACAGAGCTGAGAAGGAAAATGATTACCTAGTACCAACATATGGACAAGACAGAACAAGAAAAGCGAGCAAGAGGGTAGATAACAACCAGTTGTCTACCATAGAAGACAAAAGGAAGATAGGCTCTCGTGCTAAACATGCAAATGTATCACATGTTGAGAATACATATTCTGATCCTGATGATGATTTTAATGCTCTGCTGAAGGATGAGGAAGAACTTGTAACTGCTCACCGCAAACAAGTGGAGGAAACAGTAGATATTGTTAGGGAGGAGATGAATTTACTCTTTGAAGCTGATCAACCAGGAACTCAATTGGATGCTTATATTTCCAAATTGAATACCATTTTGTCTCAAAAGGCTGCAGGAATATTTCAATTGCAGACTCAGTTGGCTCAATTCCAGAGACGTTTAAATGAGTACAACGTTTTCTCATCCTCGGGTGACTGA	2022	0.4144	MPRSSSGVHHQRQSSDNFILDANYQGRWFHPSAFAHEFGTRSSSLRKSEDDGVFMSGLLDLHSFDTELLPEGQYFDDSEPIFPGNKLAPRSRGLTEGNILRSFSADKERANNVAKIKVAVRKRPLNKKEIAKKEEDIITINSNSLTVHERKLKVDLTEYVEKHGFFFDAVLDEDVSNDEVYAETVEPIVPLIFQRTKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYRSQGFQLYFSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVFEVETIKQFIEKGNASRSTGTTGANEESSRSHAILQLVIKRSADGSESKPARVIGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDSDQGHIPFRGSKLTEVLRDSFVGDSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNSSRRDSLSLSNLRDSTVLPILPHDDSYEDEITYVSGERNQFGWSKQPQREPSPPNKVDRVASGRIEGNLAPSMYSDRQGGIQNDRAEKENDYLVPTYGQDRTRKASKRVDNNQLSTIEDKRKIGSRAKHANVSHVENTYSDPDDDFNALLKDEEELVTAHRKQVEETVDIVREEMNLLFEADQPGTQLDAYISKLNTILSQKAAGIFQLQTQLAQFQRRLNEYNVFSSSGD*	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g0966	673	PANTHER	KINESIN-RELATED PROTEIN 6	10	671	-	-
	Psa1g0966	673	PRINTS	Kinesin heavy chain signature	195	216	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	PRINTS	Kinesin heavy chain signature	304	321	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	PRINTS	Kinesin heavy chain signature	338	356	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	PRINTS	Kinesin heavy chain signature	388	409	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	SMART	kinesin_4	113	444	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	PANTHER	KINESIN-LIKE PROTEIN KIN-13B	10	671	-	-
	Psa1g0966	673	Pfam	Kinesin motor domain	121	437	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	ProSitePatterns	Kinesin motor domain signature.	337	348	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Psa1g0966	673	MobiDBLite	consensus disorder prediction	480	532	-	-
	Psa1g0966	673	ProSiteProfiles	Kinesin motor domain profile.	115	438	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0966	673	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	113	438	IPR027417	-
	Psa1g0966	673	CDD	KISc_KIF2_like	115	436	-	-
	Psa1g0966	673	Gene3D	Kinesin motor domain	97	441	IPR036961	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g0966	Psa-Chr1	66419783	66427706	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g0966	114	438	Calmodulin-binding Proteins	AT5G65930	35.821	2.17e-44	169

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g0966	K10393		-	gmx:100775562	1070.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g0966	1	66419783	66427706	Psa1g0966	1	66419783	66427706	ECH