Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0960 ATGAATAGAGGTGTTGTACAAAGCTCACCAGTTCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATAACATGAGACCTCCGTCTCCACAACCTCCTCCTTTCTTTTCGACTCCTAATTCTAACTTTCTCATCCCTAATTTTACACCAAATTCTTCTTCTTCTCTTACTTTTCCTTCTTGGCATGATTATCATCAAGAGCTTCCTGAATCTTGGAGCCAACTACTCATGAGTGGAATTGTTGGTGAGGAAGATAAGATTGGATTGAGCCAATTTCAAAATCAAATGCTAATAACTCAAGCTCCAAATTCTTCTATTGTTGATGTTAAACAAGAAAGCTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAATTCATGTGTCACAAGTTTCAACACCAACATGTTAGATTTCTCTAACAATAATAATACAGATTTGAGGCATCCACCACCAGATCTATCTTCTGAGTGCAACAGCACTGCATCTGGTGGGGCAATGAAAAAAGCTAGGGTTCAACAAGCTGCAACTCAATCAACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGACACAAATTGAGGCTCTTAGCTTACCATACTTGAGCAATGGATCTGGAAACACAAGACAACCACATTCAGTTCAAGGAGATAAGAATTGTTTATTTCCTGAAGATCCTGGTCAGTTGCTACATGAAAATAGCTTGAAGAGGAAAGCAGTTGAAGAGGT 836 0.39 MNRGVVQSSPVQQMMASNPNWWNINNMRPPSPQPPPFFSTPNSNFLIPNFTPNSSSSLTFPSWHDYHQELPESWSQLLMSGIVGEEDKIGLSQFQNQMLITQAPNSSIVDVKQESSGNSYAYGHGNEELNSCVTSFNTNMLDFSNNNNTDLRHPPPDLSSECNSTASGGAMKKARVQQAATQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQTQIEALSLPYLSNGSGNTRQPHSVQGDKNCLFPEDPGQLLHENSLKRKAVEE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0960 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 237 IPR036638 GO:0046983
Psa1g0960 278 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 276 - -
Psa1g0960 278 Gene3D - 175 236 IPR036638 GO:0046983
Psa1g0960 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Psa1g0960 278 PANTHER OS05G0228400 PROTEIN 16 276 - -
Psa1g0960 278 CDD bHLH_AtbHLH_like 184 233 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0960 Psa-Chr1 64923329 64935337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0960 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.023 1.93e-67 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0960 - - gmx:100786555 382.874