Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0950 ATGGATCCTCCAACAAAGAGTTGGAGCATCCATACCCGACCCGAAATAACATCCCAATACGAAATCCTCGAACATGTCGGTTCCGGATCCTACGCCGACGTCTACCGTGGACGGCGAATCTCCGACGGGAGAATAGTAGCCCTTAAAGAAGTTCATGATCATCGATCAGCATCGAGAGAAATCGACGCTTTACGGATCCTTCGGGGATCCGAAAACGTTGTTTTTATGTATGAGTTCTTCTGGCGAGAAGACGAAGATGCTGTGATCGTTCTCGAGTTTCTGAAAACCGATCTCGCTACTGTGATTAAGGAGGCTGCTTCTGATGCTGGATGTGAGGGTCTTGCTGTTGGAGAGATTAAACGGTGGATGGCGAGGATACTTATGGAGTCTGGATTTGATGCATCAAATAGTGAAAATTCGTCCCTACATCCTCATGATGATATTCCCTTATCAGACAATTCAAATCGAACTGAATTTGAAAATCAAGATGAGGAAAGAATTAGTCATGAGGAATATTTTAGAGTATTAGATGAGCTGAAAATTAAGAGTCACACATATGATACTGATGATAAGGACACAAACACGCACGACGGTAACAACTCGTGCCTTGCAACATGCACAATTAGCAATGACGACGATGATGAAATTTGGAAGAATTCTTTGCCATATGAAGCAGATGAAGAAGGAGGGTATGAGGAGCTTGGTTTTCTCACATCATGTGTTGGAACAAGATGGTTTAAGGCTCCGGAACTACTTTATGGGTCGACTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCTGAGTTGTTTACATTGAAGCCTTTGTTTCCTGGAACAGGTGATATAGATCAGATTAGTAGAATCTTTAGTGTTTTGGGTAATCTGAATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAAGAATTTCTTTTACTAAGGTGGAAAACCCTATTGGTATTGAAGCATGCATGCCGAATCATTTGCATGATGAAGTTTCCTTAGTGAAAAAATTGGTTTGTTATGATCCAGCTAGGAGGGCTACTGCGGCTGAGTTACTTCATGACAAGTACTTCTATCAGTTGTGA 1110 0.4153 MDPPTKSWSIHTRPEITSQYEILEHVGSGSYADVYRGRRISDGRIVALKEVHDHRSASREIDALRILRGSENVVFMYEFFWREDEDAVIVLEFLKTDLATVIKEAASDAGCEGLAVGEIKRWMARILMESGFDASNSENSSLHPHDDIPLSDNSNRTEFENQDEERISHEEYFRVLDELKIKSHTYDTDDKDTNTHDGNNSCLATCTISNDDDDEIWKNSLPYEADEEGGYEELGFLTSCVGTRWFKAPELLYGSTNYGLEVDLWSLGCVFAELFTLKPLFPGTGDIDQISRIFSVLGNLNEEAWNGCSKLPDYGRISFTKVENPIGIEACMPNHLHDEVSLVKKLVCYDPARRATAAELLHDKYFYQL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0950 369 Pfam Protein kinase domain 20 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0950 369 Pfam Protein kinase domain 237 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0950 369 MobiDBLite consensus disorder prediction 149 163 - -
Psa1g0950 369 ProSiteProfiles Protein kinase domain profile. 20 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0950 369 Gene3D Transferase(Phosphotransferase) domain 1 208 369 - -
Psa1g0950 369 MobiDBLite consensus disorder prediction 135 163 - -
Psa1g0950 369 PANTHER CYCLIN-DEPENDENT KINASE 10 237 367 - -
Psa1g0950 369 PANTHER CYCLIN-DEPENDENT KINASE 10 18 104 - -
Psa1g0950 369 SMART serkin_6 20 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0950 369 Gene3D Phosphorylase Kinase; domain 1 11 109 - -
Psa1g0950 369 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Psa1g0950 369 SUPERFAMILY Protein kinase-like (PK-like) 233 368 IPR011009 -
Psa1g0950 369 PANTHER CELL DIVISION PROTEIN KINASE 237 367 - -
Psa1g0950 369 PANTHER CELL DIVISION PROTEIN KINASE 18 104 - -
Psa1g0950 369 SUPERFAMILY Protein kinase-like (PK-like) 9 127 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0950 Psa-Chr1 64145203 64147259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0950 4 366 Core Cell Cycle Gene Families AT4G28980 54.567 3.45e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Psa1g0950 Pkinase 5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0950 - - gmx:548056 478.404