Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0936 ATGGACGACATGGAAGACGACGCTAGGTACCCATCAAAGGGATACCCATTGAGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTACAATATCATCGCTACGACGATCCCGAAGACAACAACATCGACGATGAATACGAAGATGAAGAACCCGTAGAATTCGACGATTACAGCATAGGTGAAAACGGAATTGAAAATGGGTACGTTGGTAATTTTGAAGGAAACGAAGGGTTCATTAGGAAGAAGAGAAAATTACGAAGCGGTGGTAGTGGTGGTGGTGGTGGTGGTTCTTCTGTTTCAAACTATGAATTGGTTCCACGTGGCAAATTCTCATACGTTAATCGCGGTGGTGGTGGTTCTGGTGGTGGGGGTTCTTCTTCTGGTTCTGAGGAATGGACAGAACATGCGACTTTTGTGTTGTTGGAGATTTGGGGGGAAAAGTTTCTTCAAATTGGGAGAAACAGTTTGAGATCGGAGGAATGGCATGAGGTTTCTGAGAAAGTTTCGGAAGAGTTAAAAGTCGAACGGGACGTTTCACAGTGTAGAAGTGTTTTGGATAAGGTGAAAAGAAGGTACAAGAAAGAGAAAAGTAGAATGGATGAAATGGGTTTGGGTGTGAATTCTTGCAAGTGGCCATTTTTCAAGAGGATGGATATGTTGATGTCTTCCTCTGCAAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCCGGCGAGTATGTGTTTATGAATACAAGGGTTTATTTGAATAGGTCTAATGGTTTTGATGAAATGATGGATAGTCCTGGTGAGTCCGAGACTTCTGAGGATGATCATGAAGACGATGATTTCGATGGCGATGATGATGAGGAGGAAGACGAGGTGGATAAGGAAGAGGAGGAGGCTTCATATCGGGTGTTGGCTGATTCTATTCAGAAGTTTGGGAAGATATACGAGAAGATTGAGAATACGAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGGTGGATTTTAATAGGGAGTTGGAGTTGCAGAAGAAGCAGATTTTGGAAAGGGCTCAGGATGAAATATCGAAAATACAGGTAGGAGATGATGGCGATGATGAAGATGAGGACACTGATACTTCTGCAGATAATCTCAGTGAATAA 1143 0.4287 MDDMEDDARYPSKGYPLRRKNPNLRQKHPIRNLQYHRYDDPEDNNIDDEYEDEEPVEFDDYSIGENGIENGYVGNFEGNEGFIRKKRKLRSGGSGGGGGGSSVSNYELVPRGKFSYVNRGGGGSGGGGSSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVSEKVSEELKVERDVSQCRSVLDKVKRRYKKEKSRMDEMGLGVNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMMDSPGESETSEDDHEDDDFDGDDDEEEDEVDKEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRVDFNRELELQKKQILERAQDEISKIQVGDDGDDEDEDTDTSADNLSE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0936 380 MobiDBLite consensus disorder prediction 360 380 - -
Psa1g0936 380 MobiDBLite consensus disorder prediction 264 300 - -
Psa1g0936 380 MobiDBLite consensus disorder prediction 266 296 - -
Psa1g0936 380 Pfam Myb/SANT-like DNA-binding domain 134 223 IPR044822 -
Psa1g0936 380 Coils Coil 315 357 - -
Psa1g0936 380 Gene3D - 136 198 - -
Psa1g0936 380 MobiDBLite consensus disorder prediction 1 54 - -
Psa1g0936 380 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 38 372 IPR044823 -
Psa1g0936 380 MobiDBLite consensus disorder prediction 354 380 - -
Psa1g0936 380 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 38 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0936 Psa-Chr1 63492477 63494840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0936 264 359 Trihelix Transcription Factor Family AT3G14180 36.275 3.88e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa1g0936 Myb_DNA-bind_4 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0936 - - gmx:100790166 416.772