Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0931 ATGCCAACACGCACAACAGGAGCGATCGCACAAGACTGGGAACCGGTAGTTCTCCACAAATCAAAACCCAAAGCACAAGATCTCCGCAACCCAAAAGCAGTGAACCAAGCGCTTCGAACCGGAGCCGAAGTCCTAACGCTAAAAAAATCCACCGCTGGTTCGAACAAGAAAACTGCCGGTCCGGCTCTGAACGCGAGAAAGCTAGACGAAGCGGCTGAACCGGCGGCGTTGGAGCGGGTCGGTGGGGAAGTGAGACACACGATACAGAAAGCGCGTTTGGATAAGAAGATGAGTCAAGTTGAGCTGGCTAAACAGATAAATGAGAGGGTGCAGGTTGTTCAGGAGTATGAGAATGGGAAAGCTGTTCCTAATCAACTTGTTTTGGGGAAAATGGAGAAGGTTTTAGGTGTTAAGCTTAGGGGTAAAATTGGAAAATGA 438 0.4932 MPTRTTGAIAQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVLTLKKSTAGSNKKTAGPALNARKLDEAAEPAALERVGGEVRHTIQKARLDKKMSQVELAKQINERVQVVQEYENGKAVPNQLVLGKMEKVLGVKLRGKIGK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0931 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Psa1g0931 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Psa1g0931 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Psa1g0931 145 SMART mbf_short4 87 142 IPR001387 -
Psa1g0931 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
Psa1g0931 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Psa1g0931 145 Gene3D - 72 145 IPR010982 GO:0003677
Psa1g0931 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Psa1g0931 145 CDD HTH_XRE 88 139 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0931 Psa-Chr1 63323350 63324423 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Psa1g0931 MBF1 9.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0931 K03627 - twl:119996545 222.631