Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0927 ATGTCTTCTCTGTTCTCTAATGGCAAACCCAATTTCTCTCTTGAGATTCCCACCATCAAGTTCACCAAACTCTTCATCAATGGACAATTTGTTGATTCTCTTTCAGGAAAAGAATTTGAGACAATAGATCCTAGAAGTGGAGAAGTGATAGCAAAAATTGCAGAGGGAAGAAAAGAAGATATTGATGTTGCTGTGAGAGCGGCACGTGTCGCTTTCGATGATGGTCCATGGCCTCGAATGCCCGGTGCCGAAAGAGCAAAAATCTTGCTGAAATGGGCAGATTTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGACACCATAGATGCTGGAAAATTGTACAGTTTTTGCAAAGCTGTTGACATACCTGGAGTAGCAAATACACTCCGATACTACGCAGGTGCTGCTGATAAAATTCACGGCGAGGTTTTAAAACCCGCGCGTGAGTTGCATGCGTATACTTTGATGGAACCTATTGGCGTTGTCGGACACATAATTCCTTGGAATTTTCCTAGTACCATGTTTGCTGCTAAGGTTGCTCCGTCTTTGGCTGCTGGTTGTACTATGGTTCTTAAACCTGCTGAACAGACACCGCTTTCGGCTTTGTTTTATGCTCATCTCGCTAAACAGGCTGGAATTCCAGATGGAGTACTCAATATAGTACCTGGATTCGGTGCAACTGCGGGAGCTGCATTAAGTTCACACATGGACATTGATAAGATTAGTTTTACCGGTTCGACGGAAGTAGGACGTGAAATAATGATATCTGCGGCTAGAAGTAATTTGAAACCAGTTTCATTGGAGTTAGGAGGAAAGTCGCCTCTCTTGATTTTTGATGATGCTGATGTTGATAAGGCCGCTGAACTTGCTCTCATAGGCATCTTATTTAATAAGGGAGAAATATGTGTTGCCGGTTCACGTGTGTTTGTTCAAGAAGGAATCTACGATGAATTTGAAAAGAAATTGGTGGAGAAAGCAAAAGCTTGGATTGTTGGTGATCCTTTTGATCCTAAAGTTCAACAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAAATTCTTTCCTATATTGAACATGGAAAGAAAGAAGGTGCAACCCTTTTGACAGGTGGAAAAAATATTGGAAACAAAGGTTACTATATTGAACCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGGCAACAAGATGAAATATTTGGACTGTCATGGCACTAATGAAGTTCAAGTAAGTTATATTTTTATAATATGGTAA 1263 0.4014 MSSLFSNGKPNFSLEIPTIKFTKLFINGQFVDSLSGKEFETIDPRSGEVIAKIAEGRKEDIDVAVRAARVAFDDGPWPRMPGAERAKILLKWADLIDQNIEEIAALDTIDAGKLYSFCKAVDIPGVANTLRYYAGAADKIHGEVLKPARELHAYTLMEPIGVVGHIIPWNFPSTMFAAKVAPSLAAGCTMVLKPAEQTPLSALFYAHLAKQAGIPDGVLNIVPGFGATAGAALSSHMDIDKISFTGSTEVGREIMISAARSNLKPVSLELGGKSPLLIFDDADVDKAAELALIGILFNKGEICVAGSRVFVQEGIYDEFEKKLVEKAKAWIVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKKEGATLLTGGKNIGNKGYYIEPTIFSNVKEDMLIGNKMKYLDCHGTNEVQVSYIFIIW* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0927 420 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Psa1g0927 420 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 6 398 - -
Psa1g0927 420 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Psa1g0927 420 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 9 271 IPR016162 GO:0016491
Psa1g0927 420 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 6 398 - -
Psa1g0927 420 SUPERFAMILY ALDH-like 16 396 IPR016161 GO:0016491
Psa1g0927 420 Pfam Aldehyde dehydrogenase family 31 396 IPR015590 GO:0016491
Psa1g0927 420 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 400 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0927 Psa-Chr1 62743099 62749976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0927 7 396 Aldehyde Dehydrogenase Gene Family AT3G24503 73.791 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0927 K12355 - gmx:100783920 684.871