Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0926 ATGATAAGCATATTAAACTTGACATGTATACACGGTTTGTTAATTAATCAGGAAAGAGCAAAATTCTTGTTGAAATGGGCGGATTTAATTGATCAAAACATAGAAGAAATAGCAGCATTAGACACCATAGATGCTGGAAAATTGTACACTTTTTGCAAAGCTGTTGACATACCTGGAGTAGCAAATACTTTCCGATACTACGCCGGTGCTGCTGATAAAATTCACGGTGAGGTTTTAAAACCCGCGCGCGAGTTGCATGCGTATACTTTAATGGAACCTATTGGCGTTGTCGGACACATAATTCCTTGGAATTTTCCTAGTACCATGTTTGCTACTAAGGTTGCTCCGTCGTTGGCTGCTGGTTGTACTATAGTTCTTAAACCTGCTGAACAGACACCTCTTTCGGCTTTGTTTTATGCTCATCTCGCTAAACAGGCTGGAATTCCGGATGGAGTACTCAATGTAGTACCTGGATTTGGTGCAACTGCAGGAGCTGCATTAAGTTCACACATGGACGTTGATAAGATTAGTTTTACCGGTTCGACGGAAGTAGGACGCGAAATAATGATATCTGCGGCTAGAAGCAATTTGAAACCAGTTTCATTGGAGTTAGGAGGAAAATCGCCTCTGTTGATTTTTGATGATGCTGATGTTGATAAGGCCGCTGCACTTGCTCTCATAGGCATTTTATCTAATAAGGGAGAAATTTGTGTTGCCGGTTCACGTGTGTTTGTTCAAGAAGGAATTTATGATGAATTCGAGAAGAGGATGGTGGAGAAAGCAAAAGCTTGGATTGTAGGTGATCCTTTTGATCCTAAAGTTCAACAAGGACCTCAGGTTGACAAGAAGCAGTTTGAAAAAATTCTCTCCTATATTGAACATGGAAAGCAAGAAGGTGCAACCCTTTTGACAGGTGGTAAAAATATTGGAAACAAAGGTTACTATATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTATAG 990 0.402 MISILNLTCIHGLLINQERAKFLLKWADLIDQNIEEIAALDTIDAGKLYTFCKAVDIPGVANTFRYYAGAADKIHGEVLKPARELHAYTLMEPIGVVGHIIPWNFPSTMFATKVAPSLAAGCTIVLKPAEQTPLSALFYAHLAKQAGIPDGVLNVVPGFGATAGAALSSHMDVDKISFTGSTEVGREIMISAARSNLKPVSLELGGKSPLLIFDDADVDKAAALALIGILSNKGEICVAGSRVFVQEGIYDEFEKRMVEKAKAWIVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKQEGATLLTGGKNIGNKGYYIEPTIFSNVKEDML* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0926 329 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 230 241 IPR016160 GO:0016491
Psa1g0926 329 Pfam Aldehyde dehydrogenase family 17 328 IPR015590 GO:0016491
Psa1g0926 329 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 202 209 IPR029510 GO:0016491
Psa1g0926 329 SUPERFAMILY ALDH-like 17 328 IPR016161 GO:0016491
Psa1g0926 329 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 16 329 - -
Psa1g0926 329 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 16 329 - -
Psa1g0926 329 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 206 329 IPR016163 GO:0016620
Psa1g0926 329 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 14 205 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0926 Psa-Chr1 62572406 62574638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0926 18 328 Aldehyde Dehydrogenase Gene Family AT3G24503 74.359 8.24e-170 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0926 K12355 - gmx:100783920 556.214